FastME protocols

FastME specifications

Information


Unique identifier OMICS_15882
Name FastME
Interface Web user interface
Restrictions to use None
Input data A data alignment file, a protein alignment file, and a distance matrix.
Input format PHYLIP
Output data The inferred phylogenies.
Programming languages C
Computer skills Basic
Version 2.0
Stability Stable
Registration required Yes
Maintained Yes

Documentation


Maintainer


  • person_outline Olivier Gascuel <>

Information


Unique identifier OMICS_15882
Name FastME
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A data alignment file, a protein alignment file, and a distance matrix.
Output data The inferred phylogenies.
Operating system Unix/Linux
Programming languages C
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.0
Stability Stable
Source code URL https://gite.lirmm.fr/atgc/FastME/
Maintained Yes

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Documentation


Maintainer


  • person_outline Olivier Gascuel <>

Publications for FastME

FastME IN pipeline

2012
PMCID: 3575317
PMID: 23114024
DOI: 10.1186/1471-2164-13-577

[…] with seqboot version 3.67 [50]. distance matrices were calculated for the initial alignment as well as for each of the 500 resamples using dnadist version 3.67 [50]. trees were then created using fastme from ncbi [51] and the tree from the original alignment was compared to the 500 trees from the resamples using comparetobootstrap [52]., figtree (http://tree.bio.ed.ac.uk/software/figtree/) […]

FastME institution(s)
Institut de Biologie Computationnelle, LIRMM, UMR 5506 CNRS & Université de Montpellier, France
FastME funding source(s)
Supported by the Institut Français de Bioinformatique (RENABI-IFB, Investissements d’Avenir).

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