FastProject specifications

Information


Unique identifier OMICS_11342
Name FastProject
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data An expression matrix in a tab-delimited format (genes in rows, cells in columns); (2) a set of gene signatures, using the standard GMT format.
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for FastProject

FastProject in publication

PMCID: 5789701
PMID: 29378643
DOI: 10.1186/s13059-017-1385-x

[…] common response states across multiple donors (additional file : figure s1). more specifically, we utilize existing tools developed by our group for single-cell data analysis, including scone [] and fastproject [], and implement an irreproducible discovery rate (idr)-based framework [] in scrad (single-cell reproducibility across donors; https://github.com/yoseflab/scrad) to identify […]


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FastProject institution(s)
University of California, Berkeley, CA, USA

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