Fastq_clean specifications


Unique identifier OMICS_26451
Name Fastq_clean
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data Some DNA-seq and RNA-seq data from the Illumina sequencer.
Input format FASTQ
Biological technology Illumina
Operating system Unix/Linux
Programming languages Perl, R
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes



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  • person_outline Zhangjun Fei <>
  • person_outline Mi Zhang <>
  • person_outline Honghe Sun <>
  • person_outline Feng Zhan <>
  • person_outline Shan Gao <>

Publication for Fastq_clean

Fastq_clean institution(s)
School of Computer Science and Technology, Tianjin University, Tianjin, China; Boyce Thompson Institute for Plant Research, Cornell University Ithaca, NY, USA; Department of Computer Science, Guangxi University, Nanning, China; College of Life Science Nankai University, Tianjin, China
Fastq_clean funding source(s)
Supported by the Natural Science Foundation of Jiangxi Province of China (20132BAB214009), the National Natural Science Foundation of China (31201191 and 61170177) and the National Basic Research Program of China (2013CB32930X).

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