FastQ Screen specifications

Information


Unique identifier OMICS_01042
Name FastQ Screen
Alternative name fastq_screen
Software type Application/Script
Interface Command line interface
Restrictions to use None
Output data Text based and graphical output which summaries the mapping of the sequences against each library.
Operating system Unix/Linux
Programming languages Perl
License GNU General Public License version 3.0, GNU General Public License version 2.0
Computer skills Advanced
Version 0.11.4
Stability Stable
Requirements
Bowtie, Bismark
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainers


Additional information


http://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/fastq_screen_documentation.html

FastQ Screen review

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Anamaria Elek's avatar image No country

Anamaria Elek

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Desktop
Does a pretty good job of mapping (subset of) your reads against different genomes, using aligner of your choice (Bowtie, Bowtie2 or BWA).