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FastRFS specifications

Information


Unique identifier OMICS_13016
Name FastRFS
Alternative name Fast Robinson-Foulds Supertrees
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Requirements
Boost, Python, Dendropy, ASTRAL
Source code URL https://codeload.github.com/pranjalv123/FastRFS/zip/master
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Tandy Warnow

Publication for Fast Robinson-Foulds Supertrees

FastRFS citation

call_split

FastRFS: fast and accurate Robinson Foulds Supertrees using constrained exact optimization

2016
Bioinformatics
PMCID: 5870905
PMID: 27663499
DOI: 10.1093/bioinformatics/btw600
call_split See protocol

[…] The input to the FastRFS method is a set T of unrooted source trees, but they do not need to be binary trees (i.e. polytomies are allowed). In the basic FastRFS method, we use ASTRAL-2 to compute the set X of allowed […]


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FastRFS institution(s)
Department of Computer Science, University of Illinois, IL, USA; National Center for Supercomputing Applications and Department of Bioengineering, University of Illinois, IL, USA; Department of Bioengineering, University of Illinois, IL, USA
FastRFS funding source(s)
This work was supported by the Debra and Ira Cohen Fellowship, by a National Science Foundation graduate fellowship and by National Science Foundation grants s [CCF-1535977 and DBI-1062335/1461364].

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