Tool stats & trends
Looking to identify usage trends or leading experts?
|Interface||Web user interface|
|Restrictions to use||None|
|Input data||Query protein|
- person_outline Jinn-Moon Yang
Publication for fastSCOP
Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase
[…] 1012 consists of two domains: the N-terminal (β/α)8−barrel (ΤΙΜ-barrel) domain comprising residues 27 to 370 and the C-terminal Greek-key β-sandwich domain covering residues 371 to 483, respectively. FastSCOP classification database search results confirms the TIM beta/alpha barrel fold classification of N-terminal domain shows and further identifies it as a member of the beta-glycanases SCOP supe […]
Elementary Flux Modes Analysis of Functional Domain Networks Allows a Better Metabolic Pathway Interpretation
[…] model of each enzyme is selected based on the lowest modeller objective function score (MOF). After this step, the structural domains of the proteins are assigned to each of the protein models using fastSCOP , . Besides, fastSCOP, PFAM , , Swiss-Prot and literature review were used for the functional domain assignment.We illustrate our approach on the Bacillus subtilis pyruvate dehydrogenase mul […]
Structural bioinformatics of the human spliceosomal proteome
[…] domain identification were either extracted from the Protein Data Bank or from the SCOP parseable files on the SCOP website (http://scop.mrc-lmb.cam.ac.uk/scop/parse/index.html) or assigned using the fastSCOP server (http://fastscop.life.nctu.edu.tw/) (). PFAM domain names were assigned on the PFAM website (http://pfam.sanger.ac.uk/). SCOP v. 1.75 and PFAM v. 25.0 were used. Structural similarity […]
Looking to check out a full list of citations?
Be the first to review fastSCOP