FastSNP pipeline

FastSNP specifications

Information


Unique identifier OMICS_00173
Name FastSNP
Alternative name Function Analysis and Selection Tool for Single Nucleotide Polymorphisms
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Taxon


  • Primates
    • Homo sapiens

Publication for Function Analysis and Selection Tool for Single Nucleotide Polymorphisms

FastSNP IN pipelines

 (5)
2013
PMCID: 3635969
PMID: 23633938
DOI: 10.1371/journal.pcbi.1002902

[…] [86] look for snps affecting transcription, snpper [87] finds and annotates snp locations, conservation, and possible functionalities so that they can be visually assessed, and snpselector [88] and fastsnp [89] assess various snp features such as whether it alters the binding site of a transcription factor, affects the promoter/regulatory region, damages the 3′ utr sequence that may affect […]

2009
PMCID: 2652107
PMID: 19282985
DOI: 10.1371/journal.pgen.1000420

[…] in our gwas and the two replication cohorts containing random unrelated subjects (replication cohorts ii and iii)., to explore potential functions of the significant snps identified, we used fastsnp (function analysis and selection tool for single nucleotide polymorphisms) (http://fastsnp.ibms.sinica.edu.tw) [59] that is a web server-based program designed for functional analysis […]

2009
PMCID: 2652107
PMID: 19282985
DOI: 10.1371/journal.pgen.1000420

[…] our gwas and the two replication cohorts containing random unrelated subjects (replication cohorts ii and iii)., to explore potential functions of the significant snps identified, we used fastsnp (function analysis and selection tool for single nucleotide polymorphisms) (http://fastsnp.ibms.sinica.edu.tw) [59] that is a web server-based program designed for functional analysis of a snp based […]

2009
PMCID: 2652107
PMID: 19282985
DOI: 10.1371/journal.pgen.1000420

[…] cohorts ii and iii)., to explore potential functions of the significant snps identified, we used fastsnp (function analysis and selection tool for single nucleotide polymorphisms) (http://fastsnp.ibms.sinica.edu.tw) [59] that is a web server-based program designed for functional analysis of a snp based on information extracted from various biological databases and analytical tools […]

2009
PMCID: 2652107
PMID: 19282985
DOI: 10.1371/journal.pgen.1000420

[…] functional prediction for a snp is always based on the most up-to-date information extracted from 11 external web servers at the time of query. however, since the functional analysis of a snp using fastsnp is performed in silico based on the flanking sequence of the snp, the predicted functions can only be viewed as putative and hypothetical and may need further support from experimental work., […]

FastSNP institution(s)
Institute of Biomedical Sciences, Academia Sinica Taipei, Taiwan; Institute of Information Science, Academia Sinica Taipei, Taiwan; National Genotyping Center, Academia Sinica Taipei, Taiwan

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