FastSP specifications


Unique identifier OMICS_15055
Name FastSP
Software type Package/Module
Interface Command line interface
Restrictions to use None
Output data SP-Score: number of shared homologies (aligned pairs) / total number of homologies in the reference alignment; Modeler: number of shared homologies (aligned pairs) / total number of homologies in the estimated alignment; SP-FN: 1 - SP-Score; SP-FP: 1- Modeler; TC: number of correctly aligned columns / total number of aligned columns; Compression Factor: number of columns in the estimated alignment / number of columns in the reference alignment.
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Version 1.6.0
Stability Stable
Maintained No



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FastSP article

FastSP institution(s)
Department of Computer Science, The University of Texas at Austin, Austin, TX, USA
FastSP funding source(s)
Supported by US National Science Foundation (Grant No. DEB0733029); John P. Simon Guggenheim Foundation; Faculty Research Assignment award from the University of Texas; David Bruton Jr Centennial Professorship in Computer Science; US National Science Foundation; Graduate Fellowship from NSERC.

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