FastSP specifications

Unique identifier:
OMICS_15055
Interface:
Command line interface
Output data:
SP-Score: number of shared homologies (aligned pairs) / total number of homologies in the reference alignment; Modeler: number of shared homologies (aligned pairs) / total number of homologies in the estimated alignment; SP-FN: 1 - SP-Score; SP-FP: 1- Modeler; TC: number of correctly aligned columns / total number of aligned columns; Compression Factor: number of columns in the estimated alignment / number of columns in the reference alignment.
Programming languages:
Java
Version:
1.6.0
Maintained:
No
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

FastSP distribution

download

FastSP support

Maintainer

This tool is not maintained anymore.

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Department of Computer Science, The University of Texas at Austin, Austin, TX, USA

Funding source(s)

Supported by US National Science Foundation (Grant No. DEB0733029); John P. Simon Guggenheim Foundation; Faculty Research Assignment award from the University of Texas; David Bruton Jr Centennial Professorship in Computer Science; US National Science Foundation; Graduate Fellowship from NSERC.

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.