FastUniq specifications
- Unique identifier:
- OMICS_01044
- Software type:
- Package/Module
- Restrictions to use:
- None
- Input format:
- FASTQ
- Output format:
- FASTQ or FASTA
- Programming languages:
- C
- Stability:
- Stable
- Name:
- FastUniq
- Interface:
- Command line interface
- Input data:
- Sequence files.
- Output data:
- Unique read pairs into two sequence files with reads in the same order belonging to a pair.
- Operating system:
- Unix/Linux
- Computer skills:
- Advanced
- Maintained:
- Yes
versioning
No versioning.
FastUniq distribution
download
FastUniq support
Maintainers
- Jinhui Chen <>
- Shilin Chen <>
forum
Archived issues
Error in open left fastq file @HWUSI-EAS1780_0085_FC:2:1:1475:1022#0/1 for read!
same problem: Error in open left fastq file @SEQCORE-1829592:125:C6K48ANXX:6:1101:5191:1992 1:N:0:TAAGGCGATATCCTCT for read!
I've seen comments about this problem on other forums but found no solutions yet.
Error in open left fastq file @SRR402386.1.1 DJG64KN1:66:D0FPBACXX:7:1101:1482:1988 length=101 for read!
Credits
Publications
-
(Xu et al., 2012)
FastUniq: a fast de novo duplicates removal tool for paired short reads.
PLoS One.
PMID: 23284954 DOI: 10.1371/journal.pone.0052249
Institution(s)
The National Engineering Laboratory for Breeding of Endangered Medicinal Materials, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China; Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education of China, Nanjing Forestry University, Nanjing, China; Department of Geosciences, Stony Brook University, Stony Brook, NY, USA
Funding source(s)
Supported by the Key National Natural Science Foundation of China [Grant number 81130069], the Program for Changjiang Scholars and Innovative Research Team in University of Ministry of Education of China [Grant number IRT1150] and the National Science Foundation of China [Grant numbers
30901156, 31170619].
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