FastViromeExplorer specifications


Unique identifier OMICS_21926
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Raw reads (single-end or paired-end).
Input format FASTQ
Output data A list of identified viruses, sorted by the abundance, in the given sample along with the estimated read count or abundance and taxonomy of the viruses.
Operating system Unix/Linux, Mac OS
Programming languages Java
License BSD 2-clause “Simplified” License
Computer skills Advanced
Stability Stable
Requirements Samtools, Kallisto
Maintained Yes



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  • person_outline Liqing Zhang <>
  • person_outline Saima Tithi <>

FastViromeExplorer article

FastViromeExplorer institution(s)
Department of Computer Science, Virginia Tech, Blacksburg, VA, USA; Department of Biological Sciences, Virginia Tech, Blacksburg, VA, USA

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