FASTX-Toolkit specifications

Unique identifier:
OMICS_01045
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
License:
GNU Affero General Public License version 3
Stability:
Stable

Subtools

  • fastq_to_fasta
  • fastx_quality_stats
  • fastq_quality_boxplot_graph
  • fastx_nucleotide_distribution_graph
  • fastx_clipper
  • fastx_renamer
  • fastx_trimmer
  • fastx_collapser
  • fastx_artifacts_filter
  • fastq_quality_filter
  • fastx_reverse_complement
  • fasta_formatter
  • fasta_nucleotide_changer
  • fasta_clipping_histogram
  • fastx_barcode_splitter

versioning

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No versioning.

FASTX-Toolkit distribution

download

FASTX-Toolkit support

Maintainer

  • FASTX-Toolkit <>

forum

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User review

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1 user review

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Arup Ghosh's avatar image Arup Ghosh's country flag

Arup Ghosh

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The tools can calculate quality scores for Fastq files but the statistics are only limited to base calling the quality score. Also, fastx-toolkit has several modules for filtering out low-quality reads.