FATCAT statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Pairwise structure alignment chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

FATCAT specifications

Information


Unique identifier OMICS_03639
Name FATCAT
Alternative name Flexible structure AlignmenT by Chaining Aligned fragment pairs allowing Twists
Interface Web user interface
Restrictions to use None
Input data Protein primary and secondary structures
Input format PDB
Programming languages C++, Perl
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Publications for Flexible structure AlignmenT by Chaining Aligned fragment pairs allowing Twists

FATCAT in publications

 (6)
PMCID: 4856785
PMID: 27211563
DOI: 10.1016/j.ebiom.2016.03.009

[…] amino acid lengths were no less than 8 and co-occurred in both hnrnp a1 and a2/b1. the protein structure was obtained from published literatures. similarity analysis of protein structures was used flexible structure alignment by chaining aligned fragment pairs allowing twists (facat) method ( ), which is a method for flexible protein structure comparison. it simultaneously addresses the two […]

PMCID: 4393060
PMID: 25937947
DOI: 10.1155/2013/437168

[…] structures. native (model without energy minimization) and minimized conformers of pfmdr1 and templates were structurally superposed using fatcat [] and click [] programs, respectively. fatcat (flexible structure alignment by chaining aligned fragment pairs allowing twists) aligns protein structure flexibly by optimizing and minimizing the number of rigid-body motions (twists) around pivot […]

PMCID: 3696010
PMID: 23840464
DOI: 10.1371/journal.pone.0066427

[…] (pdb:1cdk) was used to identify the possible anp and mn2+ ligand positions in 3hgk structure and to manually place anp structure in the model. the two kinase templates were aligned using fatcat (flexible structure alignment by chaining aligned fragment pairs allowing twists) and the resultant alignment served for modelling. we combined fatcat, hhpred and ffas03 pairwise alignments to refine […]

PMCID: 2973814
PMID: 21079673
DOI: 10.1371/journal.pcbi.1000976

[…] structures was scanned in order to identify alternative binding sites. for each pairwise comparison, a p-value representing the significance of the binding site similarity was calculated., fatcat (flexible structure alignment by chaining aligned fragment pairs allowing twists) is a program for the flexible comparison of protein structures. it optimizes the alignment between two structures, […]

PMCID: 2955075
PMID: 20976204
DOI: 10.1371/journal.pone.0013361

[…] difficult to identify the ds relationships. although capable of detecting the structural similarity of 3d domain-swapping proteins, structural comparison methods with a more flexible nature, such as flexible structure alignment by chaining aligned fragment pairs allowing twists (fatcat) and structural similarity search aided by ramachandran sequential transformation (sarst) provide […]


To access a full list of publications, you will need to upgrade to our premium service.

FATCAT institution(s)
The Burnham Institute, La Jolla, CA, USA
FATCAT funding source(s)
This research was supported by NIH grant GM63208.

FATCAT reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review FATCAT