FATHMM-XF specifications

Unique identifier:
OMICS_20660
Software type:
Application/Script
Restrictions to use:
None
Input format:
VCF
Stability:
Stable
Alternative name:
FATHMM-MKL
Interface:
Web user interface
Input data:
Some comma-separated mutation data or mutations uploaded from a file.
Computer skills:
Basic
Maintained:
Yes

FATHMM-XF specifications

Unique identifier:
OMICS_20660
Software type:
Application/Script
Restrictions to use:
None
Programming languages:
Python
Computer skills:
Advanced
Requirements:
the coding and non-coding databases, tabix
Alternative name:
FATHMM-MKL
Interface:
Command line interface
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Stability:
Stable
Maintained:
Yes

versioning

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FATHMM-XF distribution

download

FATHMM-XF support

Maintainers

  • Hashem Shihab <>
  • Mark Rogers <>
  • Colin Campbell <>
  • Hashem Shihab <>
  • Mark Rogers <>
  • Colin Campbell <>

Additional information

http://fathmm.biocompute.org.uk/fathmm-xf/#documentation Previous version: http://fathmm.biocompute.org.uk/fathmmMKL.htm

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Credits

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Publications

Institution(s)

Intelligent Systems Laboratory, University of Bristol, Bristol, UK; MRC Integrative Epidemiology Unit (IEU), University of Bristol, Bristol, UK; Institute of Medical Genetics, Cardiff University, Cardiff, UK

Funding source(s)

Supported by EPSRC grant EP/K008250/1, MRC IEU grant MC_UU_12013/8 and Qiagen Inc. through a license agreement with Cardiff University.

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