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FBAT specifications


Unique identifier OMICS_07500
Alternative name Family Based Association Test
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability No
Maintained No


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Publications for Family Based Association Test

FBAT citations


Genetic variants of SLC12A3 modulate serum lipid profiles in a group of Mongolian pedigree population

PMCID: 5902855
PMID: 29661184
DOI: 10.1186/s12944-018-0737-1

[…] 15 snps of slc12a3 gene was genotyped within a 424 mongolians pedigree cohort. the associations between slc12a3 polymorphisms and four lipid profiles were analyzed by family-based association test (fbat) and confirmed with haplotype analysis., from both single site and haplotype analyses, the results demonstrated a close relationship between slc12a3 polymorphisms and ldl-c level. two snps, […]


Genome wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French Canadian population

PMCID: 5847615
PMID: 29531279
DOI: 10.1038/s41598-018-21603-7

[…] = 4.66 × 10–9) reached a genome-wide significant level of association and a subsequent validation in nunavik inuit cohort further confirmed the significance of the fhit variant association (rs780365, fbat-o, p = 0.002839). additionally, among the other promising loci (p < 5 × 10−6), the one at 3q13.2 (rs78125721, p = 4.77 × 10−7), which encompasses ccdc80, also showed an increased mutation burd […]


A new approach to chromosome wide analysis of X linked markers identifies new associations in Asian and European case parent triads of orofacial clefts

PMCID: 5587310
PMID: 28877219
DOI: 10.1371/journal.pone.0183772

[…] of these [, , ] were based on the same gwas dataset as in the current study, enabling a comparison of findings across different methods. patel et al. (2013) used ‘family-based association tests’ (fbat) [, ] and wise and co-workers used their own methods, pix-lrt [] and pix-hap []. fonseca et al. [] used x-tdt [] to analyze 23,344 snps in 27 argentinian mother-child dyads of orofacial clefts., […]


Replicative genetic association study between functional polymorphisms in AVPR1A and social behavior scales of autism spectrum disorder in the South Korean population

PMCID: 5550983
PMID: 28808521
DOI: 10.1186/s13229-017-0161-9

[…] freedom, χ 2 χ 2 statistics, p p value , 1 rs3 (complex), 2 rs7294536, 3 rs1 (gata), 4 rs10877969, n number of informative nuclear families, df degree of freedom, χ 2 χ 2 statistics, p p value, the fbat analysis showed significant association between the snps (rs7294536 and rs10877969) and multiple quantitative traits related to sociality and social communication, including total scores of scq […]


Genetic loci associated with an earlier age at onset in multiplex schizophrenia

PMCID: 5527118
PMID: 28744025
DOI: 10.1038/s41598-017-06795-8

[…] to schizophrenia was analysed using two approaches (table ). first, the association between the 14 candidate snps and affliction with schizophrenia was examined using an additive model of the fbat within the 185 multiplex families. the results showed that only 1 snp (rs571002) had a weak association signal (p = 0.049). second, by incorporating 925 age- and gender-matched community […]


Identification of membrane proteome of Paracoccidioides lutzii and its regulation by zinc

PMCID: 5676091
PMID: 29134119
DOI: 10.4155/fsoa-2017-0044

[…] protein and peptides tables generated by plgs were merged and the dynamic range of the experiments, peptides detection type and mass accuracy were determined for each condition []. software fbat [], masspivot (kindly provided by am murad), spotfire® (© tibco software inc.) and microsoft office excel (microsoft©) were used., the data obtained after analysis by nanouplc-mse […]

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FBAT institution(s)
Department of Biostatistics, Harvard University, Boston, MA, USA; Department of Biostatistics, Columbia University, New York, NY, USA
FBAT funding source(s)
Supported by FBAT (Family Based Association Tests) grant.

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