Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 7
Release date: Sep 22 2014
Last update date: Sep 23 2014
Access: Public
Diseases: Brain Neoplasms, Neoplasms
Dataset link Human Pancreatic CTCs Express the ECM Protein SPARC

Experimental Protocol


To achieve a deep RNA sequencing profile of CTCs at the single cell level, we applied a novel inertial focusing-enhanced device, the CTC-iChip, which allows high efficiency negative depletion of normal blood cells, leaving unattached CTCs in solution where they can be selected and analyzed as single cells (Pubmed ID 23552373). CTCs were then subjected to single cell RNA-sequencing (Pubmed ID 20203668).

Repositories


GEO

GSE60407

ArrayExpress

E-GEOD-60407

ENA

SRP045493

BioProject

PRJNA258196

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Contact


Ben Wittner
Ben S. Wittner

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