FCROS statistics

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Citations per year

Number of citations per year for the bioinformatics software tool FCROS
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Tool usage distribution map

This map represents all the scientific publications referring to FCROS per scientific context
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Associated diseases

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FCROS specifications

Information


Unique identifier OMICS_02234
Name FCROS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.5.6
Stability Stable
Requirements
R(≥3.1.0)
Maintained Yes

Versioning


No version available

Documentation


Publication for FCROS

FCROS citations

 (4)
library_books

Robust volcano plot: identification of differential metabolites in the presence of outliers

2018
BMC Bioinformatics
PMCID: 5896081
PMID: 29642836
DOI: 10.1186/s12859-018-2117-2

[…] e primarily been used to identify differential metabolites: (i) classical parametric approaches, such as Student’s t-test [], classical volcano plot (CVP) [] and fold change rank ordering statistics (FCROS) [], (ii) classical non-parametric approaches, such as significance analysis of microarrays (SAM) [], and the Wilcoxon [] and Kruskal-Wallis (K-W) [] tests, (iii) Bayesian parametric approaches, […]

library_books

Semi quantitative proteomics of mammalian cells upon short term exposure to non ionizing electromagnetic fields

2017
PLoS One
PMCID: 5325209
PMID: 28234898
DOI: 10.1371/journal.pone.0170762

[…] as up-regulated upon ELF exposure. Furthermore, we ranked the statistical methods according to the numbers of regulated proteins detected: RankProd returned the largest set (38 proteins), followed by fcros (21 proteins), M-score (19 proteins), fold-change assessed with peak intensity-based significance B (4 proteins), Z-score (2 proteins) and limma/TREAT (1 protein). About one-third of the differe […]

library_books

Comments on: fold change rank ordering statistics: a new method for detecting differentially expressed genes

2016
BMC Bioinformatics
PMCID: 5111201
PMID: 27846811
DOI: 10.1186/s12859-016-1322-0

[…] To search for differentially expressed (DE) genes in profiling studies, we presented a new method based on fold change rank ordering statistics (FCROS). For the derivation of this method, we considered microarrays data from two biological conditions where n probes (genes) were used with m 1 control and m 2 test samples. We performed k pairwise […]

library_books

Mof associated complexes have overlapping and unique roles in regulating pluripotency in embryonic stem cells and during differentiation

2014
eLife
PMCID: 4059888
PMID: 24898753
DOI: 10.7554/eLife.02104.025

[…] version 1.1 to calculate probe set signal intensities using Robust Multi-array Average (RMA) algorithms with default settings.To select the DE genes, we used the fold change rank ordering statistics (FCROS) method (). In the FCROS method, k pairs of test/control samples are used to compute fold changes (FC). For each pair of test/control samples, obtained FCs for all genes are ranked in increasing […]


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FCROS institution(s)
Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), INSERM U964, CNRS UMR 7104, Université de Strasbourg, Illkirch, France

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