Computational protocol: Excavation of Pid3 Orthologs with Differential Resistance Spectra to Magnaporthe oryzae in Rice Resource

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Protocol publication

[…] Sequences were aligned using DNAMAN (, Clustal X version 2.0 , DNAStar ( and manually edited using BioEdit version 7.0.1 . Protein motif search was performed using the SMART program ( and the RCM program ( MEGA 5 was used to build phylogenetic tree of Pid3 orthologs. Sliding-window analysis, polymorphism and neutral tests of different regions of the Pid3 orthologs were conducted using DnaSP version 4.0 . […]

Pipeline specifications

Software tools DNAMAN, Clustal W, BioEdit, MEGA, DnaSP
Application Phylogenetics
Organisms Oryza sativa, Magnaporthe oryzae
Diseases Nijmegen Breakage Syndrome