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FEATnotator specifications

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Unique identifier OMICS_17744
Name FEATnotator
Software type Package/Module
Interface Command line interface
Operating system Unix/Linux, Mac OS
Programming languages Perl
Computer skills Advanced
Version 1.1.2
Stability Stable
Maintained Yes

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Publication for FEATnotator

FEATnotator citations

 (2)
library_books

The Zinc Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis

2016
PLoS Genet
PMCID: 4735120
PMID: 26828932
DOI: 10.1371/journal.pgen.1005817

[…] determined using shore version 0.6 using a consensus minimum coverage of 3 reads. overlap of snps with known genomic features, and functional consequences of snps were computed and summarized using featnotator []. sequencing of sop2-1 and sop3-1 were performed using illumina technology (the genome analysis center, norwich), and mutations were identified using the mutdetect pipeline []., total […]

call_split

Identification of Pol IV and RDR2 dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis

2015
eLife
PMCID: 4716838
PMID: 26430765
DOI: 10.7554/eLife.09591.039
call_split See protocol

[…] rnas (snrnas) and small nucleolar rnas (snornas) were excluded from datasets based on their tair10 annotation coordinates. diagrams of p4r2 rna and sirna spatial relationships were produced using featnotator v1.2.2 (). sequence logos were generated with weblogo v2.8.2 ()., rna-seq reads of ∼15–94 nt (after adapter trimming) were mapped to the arabidopsis thaliana genome (version tair10) using […]


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FEATnotator institution(s)
Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN, USA; School of Informatics and Computing, Indiana University, Bloomington, IN, USA; Department of Biology, Indiana University, Bloomington, IN, USA
FEATnotator funding source(s)
This work was supported by USDA ARS Specific Cooperative Agreement 58-6631-0-101, the Cacao Genome Project of MARS, the METACyt Initiative of Indiana University, and the Lilly Endowment.

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