FEATnotator pipeline

FEATnotator specifications

Information


Unique identifier OMICS_17744
Name FEATnotator
Software type Package/Module
Interface Command line interface
Operating system Unix/Linux, Mac OS
Programming languages Perl
Computer skills Advanced
Version 1.1.2
Stability Stable
Maintained Yes

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Publication for FEATnotator

FEATnotator IN pipeline

2015
PMCID: 4716838
PMID: 26430765
DOI: 10.7554/eLife.09591.039

[…] rnas (snrnas) and small nucleolar rnas (snornas) were excluded from datasets based on their tair10 annotation coordinates. diagrams of p4r2 rna and sirna spatial relationships were produced using featnotator v1.2.2 (podicheti and mockaitis, 2015). sequence logos were generated with weblogo v2.8.2 (crooks et al., 2004)., rna-seq reads of ∼15–94 nt (after adapter trimming) were mapped […]

FEATnotator institution(s)
Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN, USA; School of Informatics and Computing, Indiana University, Bloomington, IN, USA; Department of Biology, Indiana University, Bloomington, IN, USA
FEATnotator funding source(s)
This work was supported by USDA ARS Specific Cooperative Agreement 58-6631-0-101, the Cacao Genome Project of MARS, the METACyt Initiative of Indiana University, and the Lilly Endowment.

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