featureCounts specifications

Unique identifier:
OMICS_01160
Interface:
Command line interface
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
C, R
Computer skills:
Advanced
Maintained:
Yes

versioning

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No versioning.

featureCounts distribution

download

featureCounts support

Documentation

Maintainer

  • Wei Shi <>

Additional information

This method is available in the Subread package: http://subread.sourceforge.net/; http://bioconductor.org/packages/release/bioc/html/Rsubread.html or https://sourceforge.net/projects/subread/

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No open topic.

Credits

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Publications

Institution(s)

Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Department of Computing and Information Systems and Department of Mathematics and Statistics, The University of Melbourne, Parkville, VIC, Australia

Funding source(s)

Supported by the Project grant (1023454) and a Fellowship from the Australian National Health and Medical Research Council (NHMRC).

User review

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1 user review

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Arup Ghosh

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FeatureCounts is a great and fast alternative to HT-seq, also the quality of data is maintained in comparison with other pseudo-aligners.

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