FEELnc specifications

Information


Unique identifier OMICS_12414
Name FEELnc
Alternative name FlExible Extraction of LncRNAs
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input format .GTF, .FASTA
Operating system Unix/Linux
Programming languages Perl, R
Computer skills Advanced
Stability Stable
Requirements BioPerl, Parralell::ForkManager, Rscript: ROCR, randomForest
Maintained Yes

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Maintainer


  • person_outline Thomas Derrien <>

Publication for FlExible Extraction of LncRNAs

FEELnc institution(s)
Institut Génétique et Développement de Rennes, CNRS-UMR6290, University Rennes1, Rennes, France; IGEPP, BIPAA, INRA, Campus Beaulieu, Rennes, France; Institut National de Recherche en Informatique et en Automatique, Institut de Recherche en Informatique et Systèmes Aléatoires, Genscale, Campus Beaulieu, Rennes, France; Institute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland; Department of Veterinary Biosciences and Research Programs Unit, Molecular Neurology, University of Helsinki, Helsinki, Finland; The Folkhälsan Institute of Genetics, Helsinki, Finland; Department of Veterinary Clinical and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen Copenhagen, Denmark; Department of Clinical Sciences of Companion Animals, Faculty of Veterinary Medicine, Utrecht University, Utrecht, Netherlands; Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden; Broad Institute of MIT and Harvard, Cambridge, MA, USA
FEELnc funding source(s)
The "Cani-DNA_CRB", which is part of the CRB-Anim infrastructure, ANR-11-INBS-0003, is funded by the French National Research Agency in the frame of the "Investing for the Future" program.

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