Phylogeny programs page describing all known software for inferring phylogenies (evolutionary trees).

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Related Phylogenetic inference tools

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Desktop app
PolytomySolverNAD PolytomySolverNAD

PolytomySolverNAD

Is dedicated to the polytomy refinement problem. PolytomySolverNAD corrects a…

Is dedicated to the polytomy refinement problem. PolytomySolverNAD corrects a NAD (Non-Apparent Duplication) of the gene tree by applying multifurcation, given a rooted binary gene tree and species…

Desktop app
TreeTime TreeTime

TreeTime

Provides routines for ancestral sequence reconstruction and the inference of…

Provides routines for ancestral sequence reconstruction and the inference of molecular-clock phylogenies. TreeTime is a Markov chain Monte Carlo (MCMC) framework for Bayesian phylogeny…

Desktop app
phyloSkeleton phyloSkeleton

phyloSkeleton

Selects the most representative organisms, following a set of simple rules…

Selects the most representative organisms, following a set of simple rules based on taxonomy and assembly quality. phyloSkeleton allows users to retrieve the genomes from public databases (NCBI,…

Desktop app
FastTree FastTree

FastTree

Constructs large phylogenies and estimates their reliability. FastTree uses…

Constructs large phylogenies and estimates their reliability. FastTree uses nearest-neighbor interchanges (NNIs), the minimum-evolution criterion, minimum-evolution subtree-pruning-regrafting (SPRs)…

Most Popular Tools

PhyloPat PhyloPat

PhyloPat

Allows the complete Ensembl gene database to be queried using phylogenetic…

Allows the complete Ensembl gene database to be queried using phylogenetic patterns. PhyloPat offers the possibility of querying with binary phylogenetic patterns or regular expressions, or through a…

16 related tools

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