Phylogeny programs page describing all known software for inferring phylogenies (evolutionary trees).

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Related Phylogenetic inference tools

Most Recent Tools

POY
Desktop

POY

Supports multiple kinds of data (e.g. morphology, nucleotides, genes and gene…

Supports multiple kinds of data (e.g. morphology, nucleotides, genes and gene regions, chromosomes, whole genomes, etc). POY is a phylogenetic analysis program that can perform true sequence…

FastME
Desktop
Web

FastME

Provides distance algorithms to infer phylogenies. FastME is based on balanced…

Provides distance algorithms to infer phylogenies. FastME is based on balanced minimum evolution, which is the very principle of Neighbor Joining (NJ). FastME improves over NJ by performing…

RSAT…
Web

RSAT matrix-clustering

Supports dynamic browsing of motif trees with custom collapse/expansion of…

Supports dynamic browsing of motif trees with custom collapse/expansion of branches. RSAT matrix-clustering also provides multiple ways to inspect the results: motif forest with branch motifs at each…

DPRml
Desktop

DPRml Distributed Phylogeny Reconstruction by maximum likelihood

Can harness the idle computing resources of any research institute to construct…

Can harness the idle computing resources of any research institute to construct large phylogenetic trees using maximum likelihood. DPRml uses an already proven maximum likelihood-based tree building…

Most Popular Tools

PhyloPat
Data

PhyloPat

Allows the complete Ensembl gene database to be queried using phylogenetic…

Allows the complete Ensembl gene database to be queried using phylogenetic patterns. PhyloPat offers the possibility of querying with binary phylogenetic patterns or regular expressions, or through a…

16 related tools

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