Protocols

FESD specifications

Information


Unique identifier OMICS_21040
Name FESD
Alternative name Functional Element SNPs Database
Restrictions to use None
Database management system MySQL
Community driven No
Data access Browse
User data submission Not allowed
Maintained No
Wikipedia https://en.wikipedia.org/wiki/Functional_element_SNPs_database

Maintainer


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Publication for Functional Element SNPs Database

FESD citations

 (2)
call_split

Interactions between Paraoxonase 1 Genetic Polymorphisms and Smoking and Their Effects on Oxidative Stress and Lung Cancer Risk in a South Korean Population

2015
PLoS One
PMCID: 4350985
PMID: 25741997
DOI: 10.1371/journal.pone.0119100
call_split See protocol

[…] The candidate SNPs (single nucleotide polymorphisms) were selected from 3 public databases: the International HapMap Project database (http://hapmap.ncbi.nlm.nih.gov/), the Functional Element SNPs database (http://sysbio.kribb.re.kr:8080/fesd/index.jsp) [], and the SNPinfo Web Server (http://snpinfo.niehs.nih.gov/). The selection criteria were as follows: (i) haplotype-t […]

call_split

Single Nucleotide Polymorphisms in the Wnt and BMP Pathways and Colorectal Cancer Risk in a Spanish Cohort

2010
PLoS One
PMCID: 2936577
PMID: 20844743
DOI: 10.1371/journal.pone.0012673
call_split See protocol

[…] least two independent validation criteria as established in dbSNP . This included all exonic variants selected with Pupasuite and gene-regulatory regions in cis (5′or 3′ UTR ends), as defined by the FESD web browser . 5′UTR variants were only included when they complied to the abovementioned criteria and were presumed to be in the potential binding site of a known transctiptional binding factor. […]

FESD institution(s)
National Genome Information Center, Daejeon, Korea; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Korea; Center for Plant Molecular Genetics and Breeding Research, Seoul National University, Seoul, Korea
FESD funding source(s)
Supported by a grant from the KRIBB Research Initiative Program and in part by the Korean HapMap Project from the Korea Ministry of Science & Technology.

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