Dataset features

Specifications


Dataset type: Genome variation profiling by genome tiling array, Variation
Number of samples: 15
Release date: Jun 6 2008
Last update date: Sep 20 2012
Access: Public
Diseases: Disease Models, Animal
Dataset link Natural selection shapes genome wide patterns of copy number polymorphism in D. melanogaster

Experimental Protocol


In all, 17 lines were used in this study: 15 natural isolates derived from throughout sub-Saharan Africa; and 2 laboratory strains representing the reference genome for the tiling arrays and a line containing probes known to be duplicated and deleted. Each line was represented by 3 array hybridizations, for a total of 51 hybridizations. Normalization and subsequent analysis was conducted independently on 15 sets of 9 arrays. Each set was composed of the 6 lab strains and the three replicates from one natural isolate.

Repositories


GEO

GSE11326

BioProject

PRJNA106647

Download