FFAS pipeline

FFAS specifications

Information


Unique identifier OMICS_15567
Name FFAS
Alternative name Fold and Function Assignment System
Interface Web user interface
Restrictions to use None
Input data An amino acid sequence.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Adam Godzik <>

Information


Unique identifier OMICS_15567
Name FFAS
Alternative name Fold and Function Assignment System
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data An amino acid sequence.
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Documentation


Maintainer


  • person_outline Adam Godzik <>

Publications for Fold and Function Assignment System

FFAS IN pipelines

 (2)
2016
PMCID: 4999995
PMID: 27562564
DOI: 10.1038/srep32070

[…] ion. dali structure similarity search with b-box (pdbid 3q1d_a) could retrieve ring domain of baculoviral iap repeat-containing protein 7 (pdbid 4auq_b; z-score = 3.6, rmsd = 2.0 å, nali = 39) and ffas sequence similarity search with b-box (pdbid 2dja_a) could retrieve ubr-box of e3 ubiquitin-protein ligase ubr1 (pdbid 3nit_a; score = −11.4) and ring domain of zinc finger protein 183-like 1 […]

2012
PMCID: 3439487
PMID: 22984442
DOI: 10.1371/journal.pone.0043761

[…] the protein encoded by the human nfrkb gene (uniprot id: q6p4r8) did not have any domain annotation in the pfama database (release 25.0) [10], and fold recognition algorithms (hhpred [18] and ffas [19]) did not yield any significant domain predictions. however, secondary structure and structural disorder predictions calculated with psipred [20] and disopred [21], respectively, suggested […]

FFAS institution(s)
Bioinformatics and Systems Biology Program, Sanford-Burnham Medical Research Institute, La Jolla, CA, USA; Center for Research in Biological Systems, University of California, San Diego, La Jolla, CA, USA; Center of Excellence in Genomic Medicine Research (CEGMR), King Fahad Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia
FFAS funding source(s)
Supported by National Institute of Health (GM087218 and GM101457).

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