FFBSKAT specifications

Information


Unique identifier OMICS_11405
Name FFBSKAT
Alternative name Fast Family-Based Sequence Kernel Association Test
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0
Stability Stable
Requirements
GenABEL
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Gulra Svishcheva

Publication for Fast Family-Based Sequence Kernel Association Test

FFBSKAT citations

 (2)
library_books

WISARD: workbench for integrated superfast association studies for related datasets

2018
BMC Med Genomics
PMCID: 5918457
PMID: 29697360
DOI: 10.1186/s12920-018-0345-y

[…] six predefined causal genes of 200 simulated phenotypes in GAW17. Their estimated statistical powers were compared with existing toolsets for family-based analyses: MONSTER [], famSKAT [], and famBT, FFBSKAT, MLR in FREGAT [], as well as the methods for analysis of independent samples: SKAT and CMC. […]

library_books

Adaptive Combination of P Values for Family Based Association Testing with Sequence Data

2014
PLoS One
PMCID: 4277421
PMID: 25541952
DOI: 10.1371/journal.pone.0115971

[…] A method to deal with pedigree data, and compare its power performance with that of the burden test , the kernel statistic , and the FFBSKAT method (famSKAT and ASKAT are essentially equivalent to FFBSKAT). We also apply the method to the Genetic Analysis Workshop 17 (GAW 17) data , . Some family-based association testing methods were designed for trio data (or trios plus unrelated controls), s […]

FFBSKAT institution(s)
Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia; Novosibirsk State University, Novosibirsk, Russia
FFBSKAT funding source(s)
This work was supported by grants from the Russian Foundation for Basic Research (13-04-00272, 14-04-00126).

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