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Protocols

FFGED specifications

Information


Unique identifier OMICS_21041
Name FFGED
Alternative name Filamentous Fungal Gene Expression Database
Restrictions to use None
Database management system MySQL
Community driven No
Data access Browse
User data submission Allowed
Maintained Yes

Maintainers


  • person_outline Jeffrey Townsend
  • person_outline Zhang Zhang

Additional information


http://bioinfo.townsend.yale.edu/faq.jsp

Publication for Filamentous Fungal Gene Expression Database

FFGED citations

 (3)
call_split

Gene Expression Differences among Three Neurospora Species Reveal Genes Required for Sexual Reproduction in Neurospora crassa

2014
PLoS One
PMCID: 4203796
PMID: 25329823
DOI: 10.1371/journal.pone.0110398
call_split See protocol

[…] lete families in those three species. Transcriptomic sequencing revealed expression levels for all orthologous gene triads across sexual development (). Data is also deposited as accession 239 at the Filamentous Fungal Gene Expression Database (FFGED; ) and as accession GSE41484 for N. crassa , GSE60256 for N. tetrasperma, and GSE60255 for N. discreta at the National Center for Biotechnology Infor […]

library_books

Identification of the CRE 1 Cellulolytic Regulon in Neurospora crassa

2011
PLoS One
PMCID: 3183063
PMID: 21980519
DOI: 10.1371/journal.pone.0025654

[…] ng at least a 2-fold increase or decrease in relative expression level were used for Functional Category Analysis, as described in . All profiling data are available at the MIAME-compliant databases (Filamentous Fungal Gene Expression Database; Experiment ID = 61; http://bioinfo.townsend.yale.edu/browse.jsp) and GEO (Accession Number = GSE30313; http://www.ncbi.nlm.nih.gov/geo/info/linking.html). […]

library_books

Multi targeted priming for genome wide gene expression assays

2010
BMC Genomics
PMCID: 3091673
PMID: 20716356
DOI: 10.1186/1471-2164-11-477

[…] ressed functional categories was calculated using a Fisher's exact test. Raw expression data and analysis results are deposited under accession #25 at the Filamentous Fungal Gene Expression Database (FFGED) [,] and under accession GSE230003 at the NCBI Gene Expression Omnibus (GEO) database []. […]

Citations

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FFGED institution(s)
Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA
FFGED funding source(s)
Supported by program project grant GM068087 from the National Institute of General Medical Sciences at the US National Institutes of Health.

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