FFNCAA specifications

Information


Unique identifier OMICS_23115
Name FFNCAA
Alternative names Forcefield_NCAA, FF_NCAA
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data A protein structure.
Input format PDB
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Christodoulos A. Floudas

Additional information


http://selene.princeton.edu/FFNCAA/files/instructions.txt

Publication for Forcefield_NCAA

FFNCAA citation

library_books

PEPstrMOD: structure prediction of peptides containing natural, non natural and modified residues

2015
Biol Direct
PMCID: 4687368
PMID: 26690490
DOI: 10.1186/s13062-015-0103-4

[…] substituted amino acids, etc. These non-natural amino acids cannot be directly handled by standard force field libraries implemented in AMBER and GROMACS. PEPstrMOD uses special force field libraries FFNCAA and SwissSideChain, to incorporate these non-natural amino acids in the peptide followed by energy minimization and molecular dynamics to generate the tertiary structure of the peptide having t […]

FFNCAA institution(s)
Department of Chemical and Biological Engineering, Princeton University, Princeton, NJ, USA
FFNCAA funding source(s)
Supported by the National Institutes of Health (R01GM052032), the National Science Foundation and National Science Foundation Graduate Research Fellowship under grant number DGE-1148900.

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