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FGDB specifications

Information


Unique identifier OMICS_03102
Name FGDB
Alternative name Fusarium graminearum Genome Database
Restrictions to use None
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Fusarium_graminearum_genome_database

Publication for Fusarium graminearum Genome Database

FGDB citations

 (11)
call_split

Black perithecial pigmentation in Fusarium species is due to the accumulation of 5 deoxybostrycoidin based melanin

2016
Sci Rep
PMCID: 4872168
PMID: 27193384
DOI: 10.1038/srep26206
call_split See protocol

[…] Genome sequences for Fg, Fve and Fo were retrieved from FGDB at MIPS and http://www.broadinstitute.org/Ff from GenBank (HE613440) with annotations from MIPS, Fs from Nh 2.0, Fp CS3096 (AFNW00000000.1), Fvi (AEYB01000000) and Fa 05001 (Fa05001) from Genbank […]

call_split

Utilization of a Conidia Deficient Mutant to Study Sexual Development in Fusarium graminearum

2016
PLoS One
PMCID: 4866773
PMID: 27175901
DOI: 10.1371/journal.pone.0155671
call_split See protocol

[…] ov/geo/query/acc.cgi?acc=GSE79532). Raw RNA-seq data from 2 h and 24 h after sexual induction (WT-2 h and WT-24 h) were obtained in a previous study [] and realigned into the genome obtained from the Fusarium graminearum Genome Database [] for the comparative transcriptome analysis.Alignments were generated with BWA [] using the F. graminearum genome [] and the htseq-count script in the HTSeq pack […]

library_books

Cellular Tracking and Gene Profiling of Fusarium graminearum during Maize Stalk Rot Disease Development Elucidates Its Strategies in Confronting Phosphorus Limitation in the Host Apoplast

2016
PLoS Pathog
PMCID: 4790934
PMID: 26974960
DOI: 10.1371/journal.ppat.1005485

[…] egulated in the spore sample (compared to in vitro hyphae) as genes preferentially expressed during hyphal growth in maize stalk (PEMS).Based on Munich Information Center for Protein Sequences (MIPS) FGDB Functional Catalogue (FunCat) annotation [, , ], 5,147 F. graminearum genes are assigned to FunCat categories, 4,966 of the 13,346 genes presented on our microarray have assigned FunCat categorie […]

library_books

Transcriptome Based Analysis of Kidney Gene Expression Changes Associated with Diabetes in OVE26 Mice, in the Presence and Absence of Losartan Treatment

2014
PLoS One
PMCID: 4020814
PMID: 24827579
DOI: 10.1371/journal.pone.0096987

[…] T, Simple Modular Architecture Research Tool (http://smart.embl-heidelberg.de/); INTERPRO, The Integrated Resource of Protein Families, Domains and Sites (http://mips.helmholtz-muenchen.de/genre/proj/FGDB/Search/Catalogs/searchCatfirstIpr.html); PIR superfamily, the Protein information Resource’s non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolution […]

library_books

Deciphering the Cryptic Genome: Genome wide Analyses of the Rice Pathogen Fusarium fujikuroi Reveal Complex Regulation of Secondary Metabolism and Novel Metabolites

2013
PLoS Pathog
PMCID: 3694855
PMID: 23825955
DOI: 10.1371/journal.ppat.1003475

[…] http://www.broadinstitute.org/annotation/genome/fusarium_group/MultiHome.html . The genome of F. graminearum and annotation version 3.2 was retrieved from http://mips.helmholtz-muenchen.de/genre/proj/FGDB/ . Brenda Wingfield, University of Pretoria, South Africa provided access to genome sequence of F. circinatum . Stanley Freeman, The Hebrew University of Jerusalem, Israel provided access to geno […]

library_books

Reconstruction of the biosynthetic pathway for the core fungal polyketide scaffold rubrofusarin in Saccharomyces cerevisiae

2013
Microb Cell Fact
PMCID: 3654996
PMID: 23557488
DOI: 10.1186/1475-2859-12-31

[…] A wild type F. graminearum PH1 PKS12 ORF was constructed using USER friendly cloning [] by the assembly of the six exons predicted by MIPS [] [FGDB: FGSG_02324] into the recipient vector BGHA-P1 [] with in vivo ligation in E. coli. All exon fragments were PCR amplified from F. graminearum PH1 genomic DNA using primers designed with the PHUSE […]

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FGDB institution(s)
Helmholtz Zentrum München, German Research Center for Environmental Health, Institute of Bioinformatics and Systems Biology, Neuherberg, Germany

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