FibrilTool statistics

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FibrilTool specifications

Information


Unique identifier OMICS_10572
Name FibrilTool
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Requirements
ImageJ
Maintained Yes

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Publication for FibrilTool

FibrilTool in publications

 (21)
PMCID: 5897395
PMID: 29651108
DOI: 10.1038/s41598-018-24273-7

[…] images were processed by imaris 8.2 software (bitplane, zurich, switzerland)., to quantify cellular alignment with the direction of flow, cell orientation was analyzed and quantified using the fibriltool plugin function in fiji (http://fiji.sc/fiji) following the published protocol both under static and flow conditions. fluorescent signals from cd31 and f-actin staining were used. three […]

PMCID: 5854917
PMID: 29547847
DOI: 10.1016/j.redox.2018.02.024

[…] per well, random viewing areas, duplicate wells per group, three independent experiments). f-actin anisotropy (how parallel the fibers are) and orientation were evaluated using the image j plug-in “fibriltool”: confocal pictures of the actin fibers (green channel) were converted to greyscale images and at least 3–4 cells from each picture were analyzed with the plug-in., podocytes were serum […]

PMCID: 5887935
PMID: 29383853
DOI: 10.1111/tpj.13841

[…] the uniform periclinal cortical microtubule array and the single‐cell‐layer nature of suspensor cells, the periclinal cortical microtubule array of suspensor cells could be readily analysed with fibriltool (boudaoud et al., ); the results supported the dominant orientation (figure g–i)., in conclusion, all mitotic and cytokinetic cytoskeletal structures were found in early embryos […]

PMCID: 5869003
PMID: 29475972
DOI: 10.1242/dev.155275

[…] 8 h after wounding. wounded astrocyte cultures were fixed with pfa and immunostained for tubulin. confocal z-stack images of individual wound-edge astrocytes were analyzed using the imagej plug-in fibriltool (). briefly, regions of interest were drawn around a single-cell tubulin cytoskeleton and the average fibril orientation provided by the plug-in was compared with the actual angle […]

PMCID: 5792472
PMID: 29246925
DOI: 10.1523/JNEUROSCI.2127-17.2017

[…] plugin called ridge detection (). in addition to the detection of these rods, we were able to automatically quantify the orientation of the radiating structures using another imagej plugin called fibriltool (). fibriltool calculates a value referred to as “anisotropy,” which is a measure of how parallel the fibers are with respect to each other. mean anisotropy values were compared […]


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FibrilTool institution(s)
Laboratoire de Reproduction et Développement des Plantes, Institut National de la Recherche Agronomique (INRA), Centre National de la Recherche Scientifique (CNRS), Ecole Normale Supérieure de Lyon (ENS), Université de Lyon, Lyon, France

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