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FIEFDom specifications

Information


Unique identifier OMICS_07067
Name FIEFDom
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Publication for FIEFDom

FIEFDom citations

 (3)
library_books

Extending Protein Domain Boundary Predictors to Detect Discontinuous Domains

2015
PLoS One
PMCID: 4621036
PMID: 26502173
DOI: 10.1371/journal.pone.0141541

[…] by predicting the size and the segment number of domains. domcut[] predicts inter-domain linker regions based solely on amino acid sequence composition information. pfam[–], everest[,] adda[], and fiefdom[] focus on domain boundaries prediction based on homologous alignments. chopnet[],dompro[], domnet[], pprodo[], drop[] and dobo[] use different machine learning methods to identify domain […]

library_books

Protein inter domain linker prediction using Random Forest and amino acid physiochemical properties

2014
BMC Bioinformatics
PMCID: 4290662
PMID: 25521329
DOI: 10.1186/1471-2105-15-S16-S8

[…] assessment of fully automated structure prediction 4 (cafasp-4) [,] and it was ranked among the top ab initio domain predictors. other popular homology-based methods include scooby-domain [], and fiefdom []., ml-based methods have gained lots of attentions in protein domain-linker prediction tasks. recent approaches employ machine learning techniques such as artificial neural networks (ann) […]

library_books

Prediction of Protein Domain with mRMR Feature Selection and Analysis

2012
PLoS One
PMCID: 3376124
PMID: 22720092
DOI: 10.1371/journal.pone.0039308

[…] , , took the strategy by integrating the template-based method and the ab-initio method. in the mean time, many softwares and web-server tools were developed for predicting protein domains, such as fiefdom , dompro , drop , domcut and globplot . most of these tools aimed at predicting domain linker or domain boundary, and then followed by inferring the domain region., the present study […]


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FIEFDom institution(s)
Biotechnology HPC Software Applications Institute, Telemedicine and Advanced Technology Research Center, US Army Medical Research and Materiel Command, Fort Detrick, MD, USA

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