Figaro protocols

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Figaro specifications

Information


Unique identifier OMICS_14822
Name Figaro
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++, Perl
License Artistic License version 2.0
Computer skills Advanced
Version 1.05
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Mihai Pop <>

Publication for Figaro

Figaro in pipeline

2017
PMCID: 5496344
PMID: 28676050
DOI: 10.1186/s12918-017-0441-1

[…] divided this process in 4 steps: (1) illumina raw data was error corrected, and then sequences were assembled using the trinity package. (2) roche 454 gs flx raw reads were cleaned and trimmed with figaro []. (3) using blastn, 454 reads were mapped to illumina contigs in order to avoid redundancy between corrected illumina contigs and 454 data. (4) we generated 3 sets of data: the first […]


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Figaro in publications

 (131)
PMCID: 5910404
PMID: 29679078
DOI: 10.1038/s41598-018-24154-z

[…] out at 25 °c and repeated at least three times., specular neutron reflection measurements were performed at the institut laue-langevin (grenoble, france) using the time-of-flight reflectometer figaro. the clean silicon crystals were characterized in h2o and d2o. for the construction of the slb, the lipid vesicle solution was allowed to incubate on the silicon crystal for minimum 15 min […]

PMCID: 5876617
PMID: 29509659
DOI: 10.3390/s18030787

[…] rfet,g) leading to low mf of (rl + rfet,g)/(rl + rfet,a) []., in our previous work, a single n-type fet amplification circuit with 2sk544 has amplified the signal of three kinds of mox gas sensors (figaro tgs2602 sensor for toluene, hanwei mq3 sensor for ethanol, hanwei mp502 sensor for acetone) successfully []. in this paper, 2sk364 (~0.05 kω in the on state) is exploited in the n-type fet […]

PMCID: 5856662
PMID: 29556477
DOI: 10.1016/j.toxrep.2018.02.005

[…] dose was decided from the previous work done in the lab []. the eggs were dosed by air sac method as devised by blankenship et al. [], on day “0” of incubation. the control group received olive oil (figaro, india) and the treatment group was administered with 0.05 μg per egg of ci with olive oil as vehicle, in a sterile environment in laminar air hood. the injection volume was kept 50 μl/egg. […]

PMCID: 5855470
PMID: 29419798
DOI: 10.3390/s18020519

[…] of:zero air generatormass flow controllerthree-way valvesample mounting systemprototype of e-nose equipped with a matrix of eight sensors: five mos-type sensors, two electrochemical sensors by figaro co. and one pid-type sensor ()analogue-to-digital converterpc-class computer, zero air generator, mass flow controller, three-way valve, sample mounting system, prototype of e-nose equipped […]

PMCID: 5805315
PMID: 29420590
DOI: 10.1371/journal.pone.0192516

[…] bergman and jörgen andersson, dept of pharmacology and clinical neuroscience, umeå university, for excellent collaboration in the laboratory work and our colleagues in the ms teams, especially erika figaro, ann-lis jonasson, agneta åkerberg, meeri sandelin, stefan larsson and ann-catrine larsson for the practical management of the study. last, but not least, we would like to express […]


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Figaro institution(s)
Center for Bioinformatics and Computational Biology, University of Maryland - College Park, MD, USA; Applied Mathematics and Scientific Computation Program, University of Maryland - College Park, MD, USA; Institute for Physical Sciences and Technology, University of Maryland - College Park, MD, USA
Figaro funding source(s)
This work was supported in part by grant R01-LM006845 from NIH and grant HU001-06-1-0015 from the Uniformed Services University of the Health Sciences administered by the Henry Jackson Foundation, by NSF grant DMS 0616585 and NIH grant 1R01HG0294501, and by University of Maryland NSF VIGRE fellowship DMS0240049.

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