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biosed
Replaces or deletes sequence sections. biosed is a simple sequence editing utility that searches for a target subsequence in one or more input sequences and replaces it with an insert subsequence, or optionally, just deletes the target subsequence where found. If the target subsequence occurs more than once, then each instance of the target is replaced or deleted. The -position option allows a sequence position to be specified as an additional constraint for the match: a replacement/deletion only occurs if the start of a match is at the specified -position position.
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