fillScaffolds statistics

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fillScaffolds specifications

Information


Unique identifier OMICS_06934
Name fillScaffolds
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for fillScaffolds

fillScaffolds in publications

 (2)
PMCID: 5596377
PMID: 28898352
DOI: 10.1590/1678-4685-GMB-2016-0230

[…] (; ) are able to identify the most probable orientation of the contigs, but may generate incorrect results in the case of genome inversions of translocations. on the other hand, sis (), car (), and fillscaffolds () consider the occurrence of changes in the genomic structure and take these phenomena into account during the analysis, generating a more accurate reconstruction. all these tools use […]

PMCID: 3622642
PMID: 23734866
DOI: 10.1186/1471-2105-14-S5-S9

[…] genome based on a reference genome., currently, several contig scaffolding tools based on the reference genomes have been developed, such as projector 2 [], oslay [], abacas [], mauve aligner [], fillscaffolds [], r2cat [] and sis []. among these contig scaffolding tools, both sis and fillscaffolds use the concept of genome rearrangements to generate contig scaffolds for a draft genome. sis […]


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fillScaffolds institution(s)
Department of Mathematics and Statistics, University of Ottawa, Ottawa, Canada

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