fillScaffolds statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool fillScaffolds
info

Tool usage distribution map

This map represents all the scientific publications referring to fillScaffolds per scientific context
info info

Associated diseases

info

Popular tool citations

chevron_left Reference-assisted assembly chevron_right
Want to access the full stats & trends on this tool?

fillScaffolds specifications

Information


Unique identifier OMICS_06934
Name fillScaffolds
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Publication for fillScaffolds

fillScaffolds citations

 (2)
library_books

Approaches for in silico finishing of microbial genome sequences

2017
Genet Mol Biol
PMCID: 5596377
PMID: 28898352
DOI: 10.1590/1678-4685-GMB-2016-0230

[…] or each iteration that contains inputs to visualize the genome in Mauve and a FASTA file with the sorted contigs. The Mauve aligner can be obtained from the URL http://darlinglab.org/mauve/mauve.html.FillScaffolds (): analyzes the genomic distance between the contig set and a reference genome and generates an ordered sequence through identifying orthologous genes. It considers the effects of the e […]

library_books

Assembling contigs in draft genomes using reversals and block interchanges

2013
BMC Bioinformatics
PMCID: 3622642
PMID: 23734866
DOI: 10.1186/1471-2105-14-S5-S9

[…] draft genome based on a reference genome.Currently, several contig scaffolding tools based on the reference genomes have been developed, such as Projector 2 [], OSLay [], ABACAS [], Mauve Aligner [], fillScaffolds [], r2cat [] and SIS []. Among these contig scaffolding tools, both SIS and fillScaffolds use the concept of genome rearrangements to generate contig scaffolds for a draft genome. SIS de […]


Want to access the full list of citations?
fillScaffolds institution(s)
Department of Mathematics and Statistics, University of Ottawa, Ottawa, Canada

fillScaffolds reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review fillScaffolds