FILTUS protocols

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FILTUS specifications

Information


Unique identifier OMICS_11098
Name FILTUS
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input data FILTUS accepts virtually any variant files, in contrast to most existing programs which are limited to VCF or other specific input formats.
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License GNU General Public License version 2.0
Computer skills Medium
Version 1.0.3
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Magnus Vigeland <>

Publication for FILTUS

FILTUS in pipeline

2016
PMCID: 5118205
PMID: 27896283
DOI: 10.1002/mgg3.237

[…] were predicted from the exome sequencing results using excopydepth (samarakoon et al. ) and the predicted cnvs were filtered and annotated using cnvscan (samarakoon et al. )., for the oslo samples, filtus (vigeland et al. ) was used for variant filtering and prioritization. rare, high‐quality variants were selected based on nhlbi exome sequencing project (esp), 1000 genomes (1000 genomes […]


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FILTUS in publications

 (4)
PMCID: 5392357
PMID: 28327570
DOI: 10.1038/ejhg.2017.27

[…] technologies, santa clara, ca, usa) identified exonic and periexonic fragments, followed by massive parallel next-generation sequencing. analysis of exome data was undertaken with denovogear or filtus, and for patient 11, raw data was processed using an end-to-end in-house database. identified variants were annotated using standard databases and were filtered based on the established […]

PMCID: 5118205
PMID: 27896283
DOI: 10.1002/mgg3.237

[…] were predicted from the exome sequencing results using excopydepth (samarakoon et al. ) and the predicted cnvs were filtered and annotated using cnvscan (samarakoon et al. )., for the oslo samples, filtus (vigeland et al. ) was used for variant filtering and prioritization. rare, high‐quality variants were selected based on nhlbi exome sequencing project (esp), 1000 genomes (1000 genomes […]

PMCID: 4999829
PMID: 27472364
DOI: 10.3390/genes7080041

[…] annotations grch 37.64 and ensembl 71, respectively. the integrative genomic viewer [] was used for data visualization., the annotated variant files were filtered and analyzed using the software filtus 0.99-91 []. variants in genes known to generate false positive signals in exome sequencing were discarded [], together with variants with minor allele frequency higher than 0.01 according […]

PMCID: 4559173
PMID: 25860647
DOI: 10.1007/s10689-015-9803-2

[…] with parameter settings according to recommendations in seqanswers exome sequencing analysis guide []. variants were annotated with annovar []. filtering was done using the filtering tool filtus version 0.99-9 []. we used two filtering strategies to find causative variant(s). the first approach was based on disease status which would enable us to find variants in potentially novel […]


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FILTUS institution(s)
Department of Medical Genetics, Oslo University Hospital and University of Oslo, Oslo, Norway; Cancer Registry of Norway, Department of Research, Oslo, Norway
FILTUS funding source(s)
This work has been supported by the South-Eastern Norway Regional Health Authority [2012066].

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