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FIMM specifications


Unique identifier OMICS_04562
Restrictions to use None
Maintained No

Publication for FIMM

FIMM citations


Genomic Characterization of Sixteen Yersinia enterocolitica Infecting Podoviruses of Pig Origin

PMCID: 5923468
PMID: 29614052
DOI: 10.3390/v10040174

[…] The genomes of 16 pig stool phages (collectively called fPS-phages, ) were sequenced by Illumina Miseq at the Institute for Molecular Medicine Finland (FIMM) []. The raw sequence data for each phage was then subjected to the A5 de novo assembly pipeline [] and alignment using the computers at the Centers for Scientific Computing []. The genome sequen […]


Comparative Genomics of the Baltic Sea Toxic Cyanobacteria Nodularia spumigena UHCC 0039 and Its Response to Varying Salinity

Front Microbiol
PMCID: 5853447
PMID: 29568283
DOI: 10.3389/fmicb.2018.00356
call_split See protocol

[…] d genomic DNA was degraded using the TURBO DNA-free™ kit (Life Technologies). Paired-end cDNA libraries were analyzed with an Illumina HiSeq sequencer at the Institute for Molecular Medicine Finland (FIMM). RNA-Seq data analysis was mainly performed on a 64-cores local Unix server and computation-intensive read alignment steps were performed on the Galaxy instance of Freiburg University (Cock et a […]


Strains of the toxic and bloom forming Nodularia spumigena (cyanobacteria) can degrade methylphosphonate and release methane

PMCID: 5955973
PMID: 29445131
DOI: 10.1038/s41396-018-0056-6
call_split See protocol

[…] f N. spumigena UHCC 0039 in control (Pi) and MPn treatment on day 12 were sequenced in three replicates of control and in two replicates of treatment, at the Institute for Molecular Medicine Finland (FIMM). Paired-end Illumina HiSeq 2500 RNA-sequencing data were deposited under the accession number of PRJNA388731 and downstream data analysis was performed as described in .N. spumigena-specific pri […]


The Swinholide Biosynthesis Gene Cluster from a Terrestrial Cyanobacterium, Nostoc sp. Strain UHCC 0450

Appl Environ Microbiol
PMCID: 5772238
PMID: 29150506
DOI: 10.1128/AEM.02321-17

[…] ches of the National Center for Biotechnology Information (NCBI) and InterPro scans (). Sequencing gaps in the gene cluster were closed by Sanger sequencing (Institute for Molecular Medicine Finland [FIMM]).The identities of unusual domains in the swinholide (swi) biosynthesis cluster were confirmed by comparing these to corresponding normal domains from swinholide and misakinolide biosynthesis ge […]


Genetic polymorphism related to monocyte macrophage function is associated with graft versus host disease

Sci Rep
PMCID: 5688060
PMID: 29142307
DOI: 10.1038/s41598-017-15915-3
call_split See protocol

[…] Genotyping was performed at FIMM Technology Centre, Helsinki, Finland. DNA samples from the Finnish cohort were extracted using the QIAamp DNA Blood Mini Kit (Qiagen) from the white blood cell fraction of peripheral blood sample […]


Sequencing of Lynch syndrome tumors reveals the importance of epigenetic alterations

PMCID: 5746122
PMID: 29296220
DOI: 10.18632/oncotarget.22445

[…] Sequencing was conducted at the Institute for Molecular Medicine Finland (FIMM; Helsinki, Finland) using the Nimblegen Comprehensive Cancer Panel (Roche Diagnostics), a 4Mb design with 578 cancer-related genes compiled from the Sanger Institute Cancer Gene Census Database a […]


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FIMM institution(s)
BIC/KRDL, Kent Ridge Digital Labs, Singapore

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