FinchTV statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

Protocols

FinchTV specifications

Information


Unique identifier OMICS_01019
Name FinchTV
Software type Package/Module
Interface Command line interface
Restrictions to use License purchase required
Operating system Unix/Linux, Mac OS, Windows
License Commercial
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline GeneSifter Lab Edition Team

FinchTV citations

 (275)
library_books

Widespread plant specialization in the polyphagous planthopper Hyalesthes obsoletus (Cixiidae), a major vector of stolbur phytoplasma: Evidence of cryptic speciation

2018
PLoS One
PMCID: 5940214
PMID: 29738577
DOI: 10.1371/journal.pone.0196969

[…] min, 72°C for 1 min 30 s, and a final extension at 72°C for 10 min. Sequencing was performed on an ABI Prism 3700 automated sequencer (Macrogen Inc., Seoul, South Korea). Sequences were edited using FinchTV v.1.4.0 (http://www.geospiza.com) and aligned with ClustalW [] within the MEGA v.5.2 software []. Whenever possible, six specimens per each H. obsoletus population were genotyped for mitochond […]

library_books

Monitoring Viable Cells of the Biological Control Agent Lactobacillus plantarum PM411 in Aerial Plant Surfaces by Means of a Strain Specific Viability Quantitative PCR Method

2018
Appl Environ Microbiol
PMCID: 5930365
PMID: 29523544
DOI: 10.1128/AEM.00107-18

[…] (Sigma, MO, USA), and a PCR analysis with the universal primers T7 and Sp6 was done to confirm the insertion. The RAPD-PCR fragment was sequenced (Macrogen, Seoul, South Korea) and analyzed using the FinchTV 1.4.0 software (Geospiza, Seattle, WA, USA) and Multalin software (). The specificity was ensured in silico using the BLAST program at the NCBI database (http://www.ncbi.nlm.nih.gov/BLAST).As […]

library_books

Bis Indolyl Benzenoids, Hydroxypyrrolidine Derivatives and Other Constituents from Cultures of the Marine Sponge Associated Fungus Aspergillus candidus KUFA0062

2018
Mar Drugs
PMCID: 5923406
PMID: 29642369
DOI: 10.3390/md16040119

[…] staining with ethidium bromide. DNA sequencing analyses were sequenced using the dideoxyribonucleotide chain termination method [] by Macrogen Inc. (Seoul, Korea). The DNA sequences were edited using FinchTV software and submitted into the BLAST program for alignment and compared with that of fungal species in the NCBI database (http://www.ncbi.nlm.nih.gov/). Its gene sequences were deposited in G […]

library_books

Multilocus Sequence Typing Reveals a New Cluster of Closely Related Candida tropicalis Genotypes in Italian Patients With Neurological Disorders

2018
Front Microbiol
PMCID: 5904457
PMID: 29696003
DOI: 10.3389/fmicb.2018.00679

[…] e as those previously described by . The amplified products were purified and bidirectionally sequenced as described above for ITS sequencing.Sequencing chromatograms were visually reviewed using the FinchTV v1.4 software to detect call errors and to determine the positions of heterozygous polymorphisms. Single-nucleotide polymorphisms were confirmed by examination of both forward and reverse sequ […]

library_books

Artificial neural network model for predicting the bioavailability of tacrolimus in patients with renal transplantation

2018
PLoS One
PMCID: 5886400
PMID: 29621269
DOI: 10.1371/journal.pone.0191921

[…] >T and ABCB1 2677 G>T/C alleles were determined by using Sanger’s sequencing, outsourced to Bioserve Technologies Pvt. Ltd. Hyderabad, India on ABI Prism 3730XL Genetic Analyzer (Applied Biosystems). FinchTV software was used to visualize the sequencing chromatograms and genotypes were noted comparing with reference sequences. ABCB1 3435 C>T polymorphism was analyzed using PCR-RFLP method. The PCR […]

library_books

Clonally diverse CD38+HLA DR+CD8+ T cells persist during fatal H7N9 disease

2018
Nat Commun
PMCID: 5827521
PMID: 29483513
DOI: 10.1038/s41467-018-03243-7

[…] equenced using TRAC or TRBC reverse internal primers (Supplementary Table ) at the Sequencing and Genotyping Facility (Department of Pathology; University of Melbourne). Sequences were analyzed using FinchTV. V-J regions were identified by IMGT query (www.imgt.org/IMGT_vquest). […]

Citations

Looking to check out a full list of citations?

FinchTV institution(s)
Softpedia

FinchTV review

star_border star_border star_border star_border star_border
star star star star star

danielt

star_border star_border star_border star_border star_border
star star star star star
Desktop
Still works well, just the installer has been removed from the website.