Find-miRNA protocols

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Find-miRNA specifications

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Unique identifier OMICS_20210
Name Find-miRNA
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data A genomic sequence and three-letter organism ID.
Output data A putative pre-miRNAs and miRNAs.
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability No
Maintained No

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Find-miRNA in pipeline

2016
PMCID: 5456327
PMID: 28933415
DOI: 10.3390/diseases4040035

[…] with asthma, obesity, alzheimer's disease and malignant neoplasm of the breast ()., network analysis with regulatory interactions was performed using the cytargetlinker app for cytoscape in order to find mirna-target, transcription factor-target or drug-target interactions for both dataset groups (naïve and ert patients) (). for this, regulatory data from designated regulatory interaction […]

Find-miRNA in publications

 (60)
PMCID: 5868305
PMID: 29616080
DOI: 10.3389/fgene.2018.00088

[…] encephalitis caused by streptococcus agalactiae in nile tilapia. although these data are important, the studies of wang et al. () and wang b. et al. () are deficient because of their failure to find mirna biomarkers that are more effective or that can be manipulated., atlantic salmon is a domesticated fish of notable economic interest for wild fisheries and aquaculture production. since […]

PMCID: 5758889
PMID: 29165639
DOI: 10.1093/nar/gkx1176

[…] these sites using reditools () script, trimming 6bp on both sides of the read. statistical significance was evaluated using wilcoxon signed-rank test, followed by fdr multiple testing correction. to find mirna gain alterations which reside within 3′utr alu sequences, we looked at perfect complementary matches between editing sites to 8-mer, 7mer-a1 and 7mer-m8 seeds, and applied […]

PMCID: 5690618
PMID: 29145474
DOI: 10.1371/journal.pone.0188177

[…] searches, 1) analyses of the expression profiles for mirnas and nurr1, to find mirnas that were not expressed in tissues where nurr1 is expressed, and vice versa; and 2) using databases, to find mirna targeting nurr1 mrna. the expression profiles used [, ] were normalized and analyzed with limma [, ] or affy [, ] bioinformatics libraries for r program. databases used were: targetscan […]

PMCID: 5596105
PMID: 28943851
DOI: 10.3389/fphys.2017.00674

[…] targeting epigenetic regulators predicted here were novel, so their possible existence also in other plant species should be pursued to verify their general importance. however, the fact that we find mirna directly targeting all types of epigenetic modifiers indicated that mirnas are central players involved in formation of epigenetic memory or at least in regulating the expression […]

PMCID: 5584353
PMID: 28890892
DOI: 10.1155/2017/2713725

[…] the most likely dysregulated mirnas principally due to age. these were mir-486-5p, -210, -4521, let-7a-1, -423-5p, -6795-5p, -6774-5p, -7111-5p, -6824-5p, and -6875-5p. next, we used targetscan to find mirna putative target genes. gene ontology was then undertaken on these genes in an effort to explore the position of the de mirnas in the chondrocyte expression network and cartilage ageing. […]

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