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FingerPRINTScan specifications

Information


Unique identifier OMICS_22308
Name FingerPRINTScan
Interface Web user interface
Restrictions to use None
Programming languages C++
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for FingerPRINTScan

FingerPRINTScan citations

 (11)
library_books

Intracellular lipid binding protein family diversity from Oyster Crassostrea gigas: genomic and structural features of invertebrate lipid transporters

2017
Sci Rep
PMCID: 5399370
PMID: 28429758
DOI: 10.1038/srep46486

[…] PRINTS v42.0 databanks. To compare with nr, blastx option from BLAST + v2.2.30 was used with an e-value filter of 1e-05. PRINTS motifs were searched online (bioinf.manchester.ac.uk/cgi-bin/dbbrowser/fingerPRINTScan/FPScan_fam.cgi) using default parameters. Pfam domains were retrieved using HMMSCAN v3.1b2 with 1e-03 as e-value threshold. Nomenclature of iLBPs adopted in this study for transcripts […]

library_books

Programmatic access to bioinformatics tools from EMBL EBI update: 2017

2017
Nucleic Acids Res
PMCID: 5570243
PMID: 28431173
DOI: 10.1093/nar/gkx273

[…] Workflow tools such as ps_scan (), InterProScan () and FingerPrintScan () have been retired, although some remain part of the InterProScan5 tool. ClustalW2 (), WU-Blast (), MaxSprout (), DaliLite (), DBClustal () and ReadSeq () have also been removed. […]

library_books

A Novel Mechanism for Protein Delivery by the Type 3 Secretion System for Extracellularly Secreted Proteins

2017
MBio
PMCID: 5371411
PMID: 28351918
DOI: 10.1128/mBio.00184-17

[…] type of motif inside the Middle segment of EspC. Coiled-coils prediction software could not detect such domains either for the Middle segment or for the EspC NH2 segment. Further analyses of EspC in FingerPRINTScan software () identified this protein as a serine protease of the IgA protease family (E value of 2.8 × 10−11), which was expected since EspC belongs to the SPATE (serine protease autotr […]

library_books

Genome sequence and description of the mosquitocidal and heavy metal tolerant strain Lysinibacillus sphaericus CBAM5

2015
Stand Genomic Sci
PMCID: 4317669
PMID: 25685257
DOI: 10.1186/1944-3277-10-2

[…] ional annotation steps, the RAST server [] and Blast2GO pipelines [] were used. Blast2GO performed the blasting, GO-mapping and annotation steps; which included a description according to the ProDom, FingerPRINTScan, PIR-PSD, Pfam, TIRGfam, PROSITE, ProDom, SMART, SuperFamily, Pattern, Gene3D, PANTHER, SignalIP and TM-HMM databases. The results were summarized with InterPro []. Additionally, a GO- […]

call_split

Comparative Analysis of Evolutionarily Conserved Motifs of Epidermal Growth Factor Receptor 2 (HER2) Predicts Novel Potential Therapeutic Epitopes

2014
PLoS One
PMCID: 4156330
PMID: 25192037
DOI: 10.1371/journal.pone.0106448
call_split See protocol

[…] The amino sequence of the extracellular domain of HER2 (ECD HER2) was aligned for fingerprints in web service (http://www.bioinf.man.ac.uk/cgi-bin/dbbrowser/fingerPRINTScan/FPScan_fam.cgi) with default settings. […]

library_books

Genome sequence and description of the heavy metal tolerant bacterium Lysinibacillus sphaericus strain OT4b.31

2013
Stand Genomic Sci
PMCID: 3910547
PMID: 24501644
DOI: 10.4056/sigs.4227894

[…] ional annotation steps, the RAST server [] and Blast2GO pipelines [] were used. Blast2GO performed the blasting, GO-mapping and annotation steps; which included a description according to the ProDom, FingerPRINTScan, PIR-PSD, Pfam, TIRGfam, PROSITE, ProDom, SMART, SuperFamily, Pattern, Gene3D, PANTHER, SignalIP and TM-HMM databases. The results were summarized with InterPro []. Additionally, a GO- […]

Citations

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FingerPRINTScan institution(s)
School of Biological Sciences, University of Manchester, Manchester, UK; Department of physical and metabolic sciences, Astra Charnwood, Leicestershire, UK
FingerPRINTScan funding source(s)
Supported by Astra Charnwood and by a Royal Society University Research Fellow.

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