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FIRE-pro

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Discovers protein motifs from large-scale proteomics datasets. FIRE-pro is a methodology has a simple goal: to discover protein motifs whose presence or absence in protein sequences correlates with the biological behavior of the corresponding proteins. It also determines motif pairs that co-occur within the same proteins and co-localize in the primary protein sequences. The FIRE-pro framework can naturally process multiple protein groups simultaneously.

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FIRE-pro versioning

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FIRE-pro classification

FIRE-pro specifications

Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable
Maintained:
Yes

FIRE-pro support

Documentation

Maintainer

  • Saeed Tavazoie <>

Credits

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Publications

Institution(s)

Department of Molecular Biology, Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA

Funding source(s)

This work was supported by grants from the NSF Career Award NHGRI (2R01HG003219), NIGMS (P50 GM071508), and the NIH Director’s Pioneer Award (1DP10D003787-01).

Link to literature

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