Allows scientists to deposit mass spectrometry (MS) raw files, perform proteome identification and quantification online, carry out bioinformatics analyses, and extract knowledge. Firmiana offers a way to easy visualize results without the need for programming expertise. It aims to facilitate for users the entire process of bioinformatics analysis from raw MS data to generate biological knowledge. The tool permits to automate large-scale data processing by using streamlined data computing workflows.
State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, National Center for Protein Sciences (The PHOENIX Center, Beijing), Beijing, China; The Center for Bioinformatics and Computational Biology, Shanghai Key Laboratory of Regulatory Biology, Institute of Biomedical Sciences and School of Life Sciences, East China Normal University, Shanghai, China; State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Institutes of Biomedical Sciences, Fudan University, Shanghai, China; State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, China
Firmiana funding source(s)
Supported by National International Cooperation Grant (2014DFB30010); National Program on Key Basic Research Project (973 Program, 2014CBA02001; 2014CBA02002; 2014CBA02004); Chinese Ministry of Science and Technology (2016YFA0502500); National High-tech R&D Program of China (863 program, 2015AA020108; 2012AA020201); National Program on Key Basic Research Project (973 Program, 2012CB910300); National International Cooperation Grant (2012DFB30080); National Natural Science Foundation of China (31200582; 31170779; 31200992; 31270822) and Beijing Natural Science Foundation (5132012; Z131100005213003) and Shanghai 111 Project (B14019).