FirstGlance protocols

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Associated diseases

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FirstGlance specifications

Information


Unique identifier OMICS_24983
Name FirstGlance
Interface Web user interface
Restrictions to use None
Input format PDB
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Eric Martz <>

Additional information


https://www.bioinformatics.org/firstglance/fgij/whatis.htm

FirstGlance in pipeline

2013
PMCID: 3667074
PMID: 23734251
DOI: 10.1371/journal.pone.0065392

[…] diphosphate kinase from d. melanogaster in the protein data bank (pdb, http://www.rcsb.org). the predicted macromolecule in the protein database file (pdb) was visualized using the software firstglance in jmol (http://molvis.sdsc.edu/fgij/). the prediction of rna secondary structure for awd was performed from the rna sequence using centroidfold sequence […]


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FirstGlance in publications

 (18)
PMCID: 5916119
PMID: 29493034
DOI: 10.1002/pro.3393

[…] was composed of uncharged residues, captured a putative polyethylene glycol molecule. these results suggest that rvsahs4 mainly uses lbs2 for the binding of uncharged molecules., pdb code(s): http://firstglance.jmol.org/fg.htm?mol=5z4g , water is indispensable for all living things. therefore, severe loss of water results in death for almost all organisms. however, some species of tardigrades, […]

PMCID: 5740555
PMID: 29079705
DOI: 10.1136/jmedgenet-2017-104822

[…] were made by using visual molecular dynamics viewer. the evaluation of the impact of the mutated residue and the protein–protein interaction analysis were performed by using swiss pdb viewer, and firstglance in jmol (http://www.jmol.org) , the patient is a 23-year-old italian male, first child from non-consanguineous parents, born at term after a normal pregnancy by caesarean delivery. […]

PMCID: 5540734
PMID: 28791129
DOI: 10.1038/hgv.2017.35

[…] tubb4a mutations have been reported.,,,,,,,,, in order to investigate how these mutations affect the microtubule structure and why the different mutations lead to various clinical features, the firstglance in jmol macromolecular visualization tool (http://bioinformatics.org/firstglance/fgij/) was used to process data from the protein data bank. all of the previously reported tubb4a […]

PMCID: 4940709
PMID: 27400707
DOI: 10.1186/s12866-016-0757-9

[…] package []. the raptor x server was used to model the corresponding translated sequences with the automated mode with refinement of structure and secondary structure prediction [] which was used to firstglance viewing. the pi, mw and the main characteristics (instability index - ii, grand average of hydropathicity - gravy and aliphatic index - ai) were inferred with compute pi/mw tool […]

PMCID: 4404324
PMID: 25893665
DOI: 10.1371/journal.pone.0123219

[…] the structural data files (.pdb) for the modeled proteins were uploaded onto the web-based membrane prediction server tm-det []. first-glance in jmol viewer (eric martz, http://bioinformatics.org/firstglance/fgij/) was used to capture high resolution images of the predicted structures., we used a standard proteomics approach to identify proteins present on the surface of a representative […]


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