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Protocols

FirstGlance specifications

Information


Unique identifier OMICS_24983
Name FirstGlance
Interface Web user interface
Restrictions to use None
Input format PDB
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Eric Martz

Additional information


https://www.bioinformatics.org/firstglance/fgij/whatis.htm

FirstGlance citations

 (16)
library_books

A novel de novo dominant mutation in ISCU associated with mitochondrial myopathy

2017
J Med Genet
PMCID: 5740555
PMID: 29079705
DOI: 10.1136/jmedgenet-2017-104822

[…] lex were made by using Visual Molecular Dynamics viewer. The evaluation of the impact of the mutated residue and the protein–protein interaction analysis were performed by using Swiss PDB viewer, and FirstGlance in Jmol (http://www.jmol.org) […]

library_books

The recombination dynamics of Staphylococcus aureus inferred from spA gene

2016
BMC Microbiol
PMCID: 4940709
PMID: 27400707
DOI: 10.1186/s12866-016-0757-9

[…] 5 package []. The Raptor X server was used to model the corresponding translated sequences with the automated mode with refinement of structure and secondary structure prediction [] which was used to FirstGlance viewing. The pI, Mw and the main characteristics (instability index - II, grand average of hydropathicity - GRAVY and aliphatic index - AI) were inferred with Compute pI/Mw tool and ProtPa […]

library_books

Identification of Outer Membrane and Exoproteins of Carbapenem Resistant Multilocus Sequence Type 258 Klebsiella pneumoniae

2015
PLoS One
PMCID: 4404324
PMID: 25893665
DOI: 10.1371/journal.pone.0123219

[…] []. The structural data files (.pdb) for the modeled proteins were uploaded onto the web-based membrane prediction server TM-DET []. First-Glance in Jmol viewer (Eric Martz, http://bioinformatics.org/firstglance/fgij/) was used to capture high resolution images of the predicted structures. […]

library_books

Isolation and Identification of an Extracellular Subtilisin Like Serine Protease Secreted by the Bat Pathogen Pseudogymnoascus destructans

2015
PLoS One
PMCID: 4364704
PMID: 25785714
DOI: 10.1371/journal.pone.0120508

[…] services/SignalP/). Phylogenetic analysis of P. destructans enzyme to dermatophytic and plant pathogenic fungi was performed by www.phylogeny.fr/ [, ]. A 3-D structure of the protein was generated by FirstGlance in Jmol (bioinformatics.org/firstglance/fgij/). Multiple sequence alignments for the three homologous PdSP proteins were performed with Clustal Omega v 1.2.0 (www.ebi.ac.uk/Tools/msa/clust […]

call_split

Structural Basis for Metallic Like Conductivity in Microbial Nanowires

2015
MBio
PMCID: 4453548
PMID: 25736881
DOI: 10.1128/mBio.00084-15
call_split See protocol

[…] pView’s “magic fit” (sequence-guided structural alignment, backbone RMSD of 1.52 Å), onto the 19 pilin monomers of Pseudomonas aeruginosa strain K () to obtain a full pilus filament assembly model ().FirstGlance in Jmol (http://firstglance.jmol.org) and the Jmol application (http://jmol.org) () were used to generate the images shown in . Aromatic amino acids in G. sulfurreducens PilA are highlight […]

library_books

Engaging with Molecular Form to Understand Function

2014
PMCID: 3940457
PMID: 24591499
DOI: 10.1187/cbe.13-12-0247

[…] bsites that run Jmol require that a user's computer have the latest version of the Java software (www.java.com/en) and that Java applets are enabled in its Web browser; no other software is required. FirstGlance in Jmol (http://bioinformatics.org/firstglance/fgij) is a simple platform with sophisticated functionality for viewing a molecule's structure with different diagrams, cross-sections, and e […]

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