fishplot specifications

Information


Unique identifier OMICS_18162
Name fishplot
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some clonal fractions of each tumor cell population, a representation of descent in the form of parental relationships and the timepoints at which the samples were obtained.
Output data A graph.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Apache License version 2.0
Computer skills Advanced
Stability Stable
Requirements
plotrix, png, Hmisc
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Christopher Miller

Publication for fishplot

fishplot citation

library_books

Somatic mutation dynamics in MDS patients treated with azacitidine indicate clonal selection in patients responders

2017
Oncotarget
PMCID: 5762372
PMID: 29340104
DOI: 10.18632/oncotarget.22957

[…] clusters in our dataset was formed by a single variant. By visual inspection of the data we made predictions regarding clonal architecture. Based on this data, we visualized clonal architecture using fishplot package (https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-016-3195-z). […]

fishplot institution(s)
McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA; Department of Medicine, Division of Genomics and Bioinformatics, Washington University School of Medicine, St. Louis, MO, USA; Department of Medicine, Division of Oncology, Washington University School of Medicine, St. Louis, MO, USA; Department of Genetics, Washington University School of Medicine, St. Louis, MO, USA
fishplot funding source(s)
Supported in part by funding provided by grant U54HG003079 from the National Human Genome Research Institute.

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