FISHR pipeline

FISHR specifications


Unique identifier OMICS_11267
Alternative name Find IBD Shared Haplotypes Rapidly
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Matthew Keller <>

Publication for Find IBD Shared Haplotypes Rapidly

FISHR citation

PMCID: 3770603

[…] was submitted to the standard protocol for dna extraction and purification from the qiagen qiaamp dna ffpe tissue kit. the fragments were amplified and sequenced using the primers vf2_t1 and fishr2_t1 [35]–[37]. all primers were appended with m13 tails on sequencing reactions. the pcr profile consisted of 2 min at 95°c, 35 cycles of 30 sec at 94°, 40 sec at 52°c, and 1 min at 72°c, […]

FISHR institution(s)
Institute for Behavioral Genetics, University of Colorado at Boulder, Boulder, CO, USA; Department of Psychology & Neuroscience, University of Colorado at Boulder, Boulder, CO, USA

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