FITBAR statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool FITBAR
info

Tool usage distribution map

This map represents all the scientific publications referring to FITBAR per scientific context
info info

Associated diseases

info

Popular tool citations

chevron_left Operon structure prediction chevron_right
Want to access the full stats & trends on this tool?

Protocols

FITBAR specifications

Information


Unique identifier OMICS_26514
Name FITBAR
Alternative name Fast Investigation Tool for Bacterial & Archeal Regulons
Interface Web user interface
Restrictions to use None
Programming languages C#
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Jacques Oberto

Publication for Fast Investigation Tool for Bacterial & Archeal Regulons

FITBAR citations

 (3)
call_split

Comparative genomics reveals conserved positioning of essential genomic clusters in highly rearranged Thermococcales chromosomes

2015
Biochimie
PMCID: 4640148
PMID: 26166067
DOI: 10.1016/j.biochi.2015.07.008
call_split See protocol

[…] ble at http://tubic.tju.edu.cn/Ori-Finder2/ . In a second predictive method, we used the mini-ORBs sequences identified in Pyrococcus abyssi by Matsunaga et al. as a matrix for oriC prediction using FITBAR available at http://archaea.u-psud.fr/fitbar . In this case, the search algorithm parameters were log-odds PSSM, with a local Markov Model to compute the p-value of the newly predicted ORB site […]

library_books

Structural and Mechanistic Basis of Zinc Regulation Across the E. coli Zur Regulon

2014
PLoS Biol
PMCID: 4219657
PMID: 25369000
DOI: 10.1371/journal.pbio.1001987

[…] to the recognition of E. coli Zur ,,,. This pattern was then used as a search filter of E. coli (K12, strain MG1655) promoter regions to identify possible novel Zur-regulated genes using the program Fitbar . The search identified four promoters, including all three of the known Zur regulated genes, and predicted a single novel Zur binding site 34 bases upstream of the periplasmic lysozyme inhibit […]

library_books

PePPER: a webserver for prediction of prokaryote promoter elements and regulons

2012
BMC Genomics
PMCID: 3472324
PMID: 22747501
DOI: 10.1186/1471-2164-13-299

[…] belonging to the same biological process or metabolic pathway. The database is limited to six closely related bacteria (Shewanella, ThermotogalesBacillales and Desulfovibrionales). On the other hand FITBAR [] is dedicated to TFBS mining and discovery, RegAnalyst [] and ProdoNet [] are webservers enabling integration of data on proteomics and metabolic pathways and provide subsequent graphical rep […]


Want to access the full list of citations?
FITBAR institution(s)
Université Paris-Sud 11, CNRS, UMR8621, Institut de Génétique et Microbiologie, Orsay, France
FITBAR funding source(s)
Supported by the “Centre National pour la Recherche Scientifique” (CNRS) and the “Agence Nationale de la Recherche” (ANR).

FITBAR reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review FITBAR