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- person_outline Rong Chen
- person_outline Atul Butte
Publication for fitSNPs
A review of post GWAS prioritization approaches
[…] ols that can prioritize indels are still lacking.FASTSNP uses a decision tree framework to assign different risk level to SNPs by considering the genomic location and functional effect of the SNPs ().FitSNPs calculated a differential expression ratio for all genes in the genome, and prioritize SNPs by the differential expression ratio of their associated genes ().SNPranker 2.0 first annotates the […]
Immune response profiling identifies autoantibodies specific to Moyamoya patients
[…] autoantibody arrays we identified 165 autoAbs associated with MMD as compared to control sera. We further identified a subset of 6 candidate MMD-specific autoAbs, using the novel bioinformatics tool fitSNPs, which were validated by indirect custom-designed ELISAs in a larger cohort of MMD patients (n = 46) compared to CVD control patients (n = 22). These novel autoAbs have not been previously ass […]
Application of Gene Network Analysis Techniques Identifies AXIN1/PDIA2 and Endoglin Haplotypes Associated with Bicuspid Aortic Valve
[…] ompeting knowledge-based methods for forming genetic and protein interaction networks. We also apply two other approaches to forming an ab initio list of SNPs likely to have high information content: fitSNPs and Random Forests. FitSNPs are a collection of variants gleaned from exhaustive searches of public expression data and are highly likely to be functionally relevant SNPs (but are not associat […]
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