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fitSNPs specifications

Information


Unique identifier OMICS_27328
Name fitSNPs
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Maintainers


  • person_outline Rong Chen
  • person_outline Atul Butte

Publication for fitSNPs

fitSNPs citations

 (3)
library_books

A review of post GWAS prioritization approaches

2013
Front Genet
PMCID: 3856625
PMID: 24367376
DOI: 10.3389/fgene.2013.00280

[…] ols that can prioritize indels are still lacking.FASTSNP uses a decision tree framework to assign different risk level to SNPs by considering the genomic location and functional effect of the SNPs ().FitSNPs calculated a differential expression ratio for all genes in the genome, and prioritize SNPs by the differential expression ratio of their associated genes ().SNPranker 2.0 first annotates the […]

library_books

Immune response profiling identifies autoantibodies specific to Moyamoya patients

2013
Orphanet J Rare Dis
PMCID: 3648437
PMID: 23518061
DOI: 10.1186/1750-1172-8-45

[…] autoantibody arrays we identified 165 autoAbs associated with MMD as compared to control sera. We further identified a subset of 6 candidate MMD-specific autoAbs, using the novel bioinformatics tool fitSNPs, which were validated by indirect custom-designed ELISAs in a larger cohort of MMD patients (nā€‰=ā€‰46) compared to CVD control patients (nā€‰=ā€‰22). These novel autoAbs have not been previously ass […]

library_books

Application of Gene Network Analysis Techniques Identifies AXIN1/PDIA2 and Endoglin Haplotypes Associated with Bicuspid Aortic Valve

2010
PLoS One
PMCID: 2809109
PMID: 20098615
DOI: 10.1371/journal.pone.0008830

[…] ompeting knowledge-based methods for forming genetic and protein interaction networks. We also apply two other approaches to forming an ab initio list of SNPs likely to have high information content: fitSNPs and Random Forests. FitSNPs are a collection of variants gleaned from exhaustive searches of public expression data and are highly likely to be functionally relevant SNPs (but are not associat […]

Citations

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fitSNPs institution(s)
Stanford Center for Biomedical Informatics Research, Stanford, CA, USA; Department of Pediatrics, Stanford University School of Medicine, Stanford, CA, USA; Lucile Packard Children's Hospital, Palo Alto, CA, USA; NuMedii Inc., CA, USA
fitSNPs funding source(s)
Supported by Lucile Packard Foundation for Children's Health, US National Library of Medicine (K22 LM008261), National Institute of General Medical Sciences (R01 GM079719), Howard Hughes Medical Institute, and Pharmaceutical Research and Manufacturers of America Foundation.

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