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FLAGdb++ specifications

Information


Unique identifier OMICS_03228
Name FLAGdb++
Restrictions to use None
Database management system Oracle
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Publications for FLAGdb++

FLAGdb++ citations

 (5)
call_split

Identification of a Plastid Localized Bifunctional Nerolidol/Linalool Synthase in Relation to Linalool Biosynthesis in Young Grape Berries

2014
Int J Mol Sci
PMCID: 4284690
PMID: 25470020
DOI: 10.3390/ijms151221992
call_split See protocol

[…] The gene models which were annotated as putative linalool synthase genes (LIN) were obtained from database of VitisNet [] and FLAGdb++ [] both based on grape genome []. The redundant sequences, together with imperfect models caused by insert/deletion mutation and frame shift, were dropped. The amino acid sequences encoded by […]

library_books

Speeding Cis Trans Regulation Discovery by Phylogenomic Analyses Coupled with Screenings of an Arrayed Library of Arabidopsis Transcription Factors

2011
PLoS One
PMCID: 3124521
PMID: 21738689
DOI: 10.1371/journal.pone.0021524

[…] oth collections (http://urgv.evry.inra.fr/projects/arabidopsis-TF/) that also incorporates other useful features such as an up-to-date list of TF genes in A. thaliana grouped by families and, through FLAGdb++ (http://urgv.evry.inra.fr/projects/FLAGdb/HTML/index.shtml) , links to TF transcriptomes from CATdb and GENEVESTIGATOR databases, as well as links to full-length cDNAs, T-DNA insertion muta […]

call_split

Functional Annotation, Genome Organization and Phylogeny of the Grapevine (Vitis vinifera) Terpene Synthase Gene Family Based on Genome Assembly, FLcDNA Cloning, and Enzyme Assays

2010
BMC Plant Biol
PMCID: 3017849
PMID: 20964856
DOI: 10.1186/1471-2229-10-226
call_split See protocol

[…] TEMIS tool [] to evaluate each resource and produce the final annotation. The EuGène predictions, the manual structural annotation of the 152 loci and the corresponding sequences are available in the FLAGdb++ database http://urgv.evry.inra.fr/FLAGdb[]. Protein sequences deduced from the 69 full VvTPS genes were analyzed with ChloroP for prediction of N-terminal plastidial targeting peptides [] […]

library_books

Genes of the most conserved WOX clade in plants affect root and flower development in Arabidopsis

2008
BMC Evol Biol
PMCID: 2584047
PMID: 18950478
DOI: 10.1186/1471-2148-8-291

[…] ., A. thaliana (a core eudicot), O. sativa (a monocot), P. patens (a moss) and O. tauri (a green alga). The WOX family was defined in A. thaliana and O. sativa genomes after a BLASTp [] search in the FLAGdb++ database [] using AtWUS (AT2G17950). AtWUS-like sequences were identified in the P. patens whole genome shotgun database ftp://ftp.ncbi.nih.gov/pub/TraceDB/physcomitrella_patens/, the O. taur […]

library_books

Unique genes in plants: specificities and conserved features throughout evolution

2008
BMC Evol Biol
PMCID: 2576244
PMID: 18847470
DOI: 10.1186/1471-2148-8-280

[…] for O. sativa (R3), and JGI [] for P. patens and O. lucimarinus. For A. thaliana and O. sativa, we retrieved data concerning the number of transcripts, the PFAM motifs and the promoter sequences from FLAGdb++ []. Expression data were obtained from CATdb [] and Genevestigator []. […]

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FLAGdb++ institution(s)
URGV, INRA, FRE CNRS, Evry, France; Laboratoire de Biologie des Semences, INRA, Versailles, France; Station de Génétique et Amélioration des Plantes, INRA, Versailles, France
FLAGdb++ funding source(s)
This work was supported by the French Génoplante Program.

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