FLASH specifications

Information


Unique identifier OMICS_32102
Name FLASH
Alternative names Finding Low Abundance Sequences by Hybridization, FLASHit
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some genes to be targeted and to be avoided.
Input format FASTA
Output data A list of RNA guides.
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 1.0
Stability Stable
Requirements
Anaconda
Maintained Yes

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Versioning


No version available

Documentation


Maintainer


  • person_outline Emily Crawford

Publication for Finding Low Abundance Sequences by Hybridization

FLASH institution(s)
Chan Zuckerberg Biohub; Department of Biochemistry and Biophysics, University of California, San Francisco, CA, USA; Division of Infectious Diseases, Department of Medicine, University of California, San Francisco, CA, USA; Department of Pediatrics, University of California, San Francisco, CA, USA; Chan Zuckerberg Initiative; Division of HIV, Infectious Diseases and Global Medicine, Department of Medicine, University of California, San Francisco, CA, USA; Wellcome Trust Sanger Institute, Hinxton, UK; Multidisciplinary Research Centre, University of Namibia, Windhoek, Namibia; Department of Epidemiology and Biostatistics, University of California, San Francisco, CA, USA; Section of Critical Care Medicine, Department of Pediatrics, University of Colorado School of Medicine and Children’s Hospital Colorado, Aurora, CO, USA; Division of Pulmonary and Critical Care Medicine, Department of Medicine, University of California, San Francisco, CA, USA; Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, USA; Stanford ChEM-H, Stanford University, Stanford, CA, USA
FLASH funding source(s)
Supported by UCSF CTSI Catalyst C27552C-01-135119, NHLBI K23HL138461-01A1, NIGMS 5T32GM007546, Chan Zuckerberg Initiative, NIH NHLBI 5R01HL124103, NHLBI R01HL110969, K24HL133390, R35HL140026, Chan Zuckerberg Biohub.

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