FEELnc specifications

Unique identifier:
OMICS_12414
Software type:
Pipeline/Workflow
Restrictions to use:
None
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
BioPerl, Parralell::ForkManager, Rscript: ROCR, randomForest
Name:
FlExible Extraction of LncRNAs
Interface:
Command line interface
Input format:
.GTF, .FASTA
Programming languages:
Perl, R
Stability:
Stable
Maintained:
Yes

versioning

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No versioning.

FEELnc support

Documentation

Maintainer

  • Thomas Derrien <>

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Credits

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Publications

Institution(s)

Institut Génétique et Développement de Rennes, CNRS-UMR6290, University Rennes1, Rennes, France; IGEPP, BIPAA, INRA, Campus Beaulieu, Rennes, France; Institut National de Recherche en Informatique et en Automatique, Institut de Recherche en Informatique et Systèmes Aléatoires, Genscale, Campus Beaulieu, Rennes, France; Institute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland; Department of Veterinary Biosciences and Research Programs Unit, Molecular Neurology, University of Helsinki, Helsinki, Finland; The Folkhälsan Institute of Genetics, Helsinki, Finland; Department of Veterinary Clinical and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen Copenhagen, Denmark; Department of Clinical Sciences of Companion Animals, Faculty of Veterinary Medicine, Utrecht University, Utrecht, Netherlands; Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden; Broad Institute of MIT and Harvard, Cambridge, MA, USA

Funding source(s)

The "Cani-DNA_CRB", which is part of the CRB-Anim infrastructure, ANR-11-INBS-0003, is funded by the French National Research Agency in the frame of the "Investing for the Future" program.

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