FlexPred specifications

Unique identifier:
OMICS_13732
Restrictions to use:
None
Input format:
PDB
Output format:
CSV, PDB
Stability:
Stable
Interface:
Web user interface
Input data:
It takes a 3D protein structure as input.
Output data:
Predicts a fluctuation value for each residue of the protein. An image of the structure with high fluctuation residues, a graph of the predicted fluctuation for each residue number, a link to download file containing the predicted fluctuations.
Computer skills:
Basic
Maintained:
Yes

FlexPred specifications

Unique identifier:
OMICS_13732
Interface:
Command line interface
Input data:
It takes a 3D protein structure as input.
Output data:
Produces a text file containing the predicted fluctuations for each residue.
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes
Software type:
Application/Script
Restrictions to use:
Academic or non-commercial use
Input format:
PDB
Output format:
TXT
Programming languages:
Python
Stability:
Stable

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

FlexPred distribution

download

FlexPred support

Maintainer

  • Daisuke Kihara <>
  • Daisuke Kihara <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Department of Biological Sciences, College of Science, Purdue University, West Lafayette, IN, USA; Laboratory of Theory of Biopolymers, Faculty of Chemistry, University of Warsaw, Pasteura 1, Warszawa, Poland; Department of Biological Sciences, College of Science, Purdue University, West Lafayette, IN, USA; Department of Computer Science, College of Science, Purdue University, University Street, West Lafayette, IN, USA

Funding source(s)

This work was partly supported by the National Institute of General Medical Sciences of the National Institutes of Health (R01GM097528) and the National Science Foundation (IIS1319551, DBI1262189, IOS1127027).

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

Related Tools