FlexPred specifications

Information


Unique identifier OMICS_13732
Name FlexPred
Interface Web user interface
Restrictions to use None
Input data It takes a 3D protein structure as input.
Input format PDB
Output data Predicts a fluctuation value for each residue of the protein. An image of the structure with high fluctuation residues, a graph of the predicted fluctuation for each residue number, a link to download file containing the predicted fluctuations.
Output format CSV, PDB
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Daisuke Kihara <>

Information


Unique identifier OMICS_13732
Name FlexPred
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data It takes a 3D protein structure as input.
Input format PDB
Output data Produces a text file containing the predicted fluctuations for each residue.
Output format TXT
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Maintainer


  • person_outline Daisuke Kihara <>

Publications for FlexPred

FlexPred institution(s)
Department of Biological Sciences, College of Science, Purdue University, West Lafayette, IN, USA; Laboratory of Theory of Biopolymers, Faculty of Chemistry, University of Warsaw, Pasteura 1, Warszawa, Poland; Department of Biological Sciences, College of Science, Purdue University, West Lafayette, IN, USA; Department of Computer Science, College of Science, Purdue University, University Street, West Lafayette, IN, USA
FlexPred funding source(s)
This work was partly supported by the National Institute of General Medical Sciences of the National Institutes of Health (R01GM097528) and the National Science Foundation (IIS1319551, DBI1262189, IOS1127027).

FlexPred reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review FlexPred