flowClean statistics

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

flowClean specifications

Information


Unique identifier OMICS_11443
Name flowClean
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.18.0
Stability Stable
Requirements
grid, R(>=2.15.0), gridExtra, sfsmisc, flowCore, flowViz, changepoint, bit
Maintained Yes

Subtool


  • GenePattern web server

Versioning


Add your version

Documentation


Maintainer


  • person_outline Kipper Fletez-Brant <>

Information


Unique identifier OMICS_11443
Name flowClean
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Subtool


  • GenePattern web server

Documentation


Maintainer


  • person_outline Kipper Fletez-Brant <>

Publication for flowClean

flowClean in publication

PMCID: 4604146
PMID: 26460486
DOI: 10.1371/journal.pone.0140243

[…] protocol at the molecular biology core facilities at dana-farber cancer institute. probe summarization was performed using the brainarray ensg v18 chip definition file and rma normalized using the genepattern web server at the broad institute [, ]. gsea analysis for enrichment of transcription factor target genes was performed on the genepattern server using the c3: motif gene sets from msigdb […]


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flowClean institution(s)
McKusick-Nathans Institute of Genetic Medicine and Department of Biostatistics, Johns Hopkins University, Baltimore, MD, USA; Vaccine Research Center, National Institutes of Allergy and Infectious Disease, National Institutes of Health, Baltimore, MD, USA; Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, Canada

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